Query= MSMg01no376_k13.b1 MSMg01no376_k13.b1 CHROMAT_FILE:
MSMg01no376_k13.b1 PHD_FILE: MSMg01no376_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:36 2005
(567 letters)
>mm_chr16_73292608_73293575
Length = 968
Score = 961 bits (497), Expect = 0.0
Identities = 542/563 (96%), Gaps = 13/563 (2%)
Strand = Plus / Minus
Query: 7 attctcttgctttccatttttctctgtgcctctccgtctctgtctctttctgtctctctc 66
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 attctcttgctgtctatttttctctgtgcctctccgtctctgtctctttctgtctctctc 893
Query: 67 cctctcttctgtctttcctattttctctgttatttccagtacctttcccttctcatatga 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 cctctcttctgtctttcctattttctctgttatttccagtacctttcccttctcatatga 833
Query: 127 actcagatctaaaggaagagagtctgcaagtaaacagaacagacaggacaattttatttt 186
||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 832 actcagatctaaaggaacagagtctgcaagtaaacagaacagacaggaca---------- 783
Query: 187 attttattttatttcaaagaggaaggaatgcatatctaaaaacaatgaaagtttaaataa 246
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct: 782 attttattttatttcaaagaggaaggaatgcatctctaaaaacaatggaagtttaaataa 723
Query: 247 agcttgaaaataccttgaaattataatgaaaggaatttgc-aaaacactccttgggtaag 305
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 722 agcttgaaaataccttgaaattataatgaacggaatttgcaaaaacactccttgggtaag 663
Query: 306 aataaaactgtgttggacattttccaagtagttttactaaatgggtgaatgagttcattt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aataaaactgtgttggacattttccaagtagttttactaaatgggtgaatgagttcattt 603
Query: 366 agggtatgatttaatcctttaatgccctcttcaaaagtcggtttaagtttgttcctattt 425
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aggatatgatttaatcctttaatgccctcttcaaaagtcggtttaagtttgttcctattt 543
Query: 426 attttcc-ggcgttgtctcatcacttcactaaaagctctctaaattctctccataaggta 484
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 a-tttcctggcgttgtctcatcacttcactaaaagctctctaaattctctccataaggta 484
Query: 485 aacacccatattcctctttctaccaggacacacacgttactaggctgatctaactcctat 544
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 483 aacacccatattcctctttctaccaggacacacacattactaggctgatctaactcctat 424
Query: 545 gcttatgatctaactcctatgtc 567
|||||||||||||||||||||||
Sbjct: 423 gcttatgatctaactcctatgtc 401
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space: 533606
Effective search space used: 533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_k13.g1 MSMg01no376_k13.g1 CHROMAT_FILE:
MSMg01no376_k13.g1 PHD_FILE: MSMg01no376_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:36 2005
(522 letters)
>mm_chr16_73079813_73080734
Length = 922
Score = 886 bits (458), Expect = 0.0
Identities = 505/522 (96%), Gaps = 6/522 (1%)
Strand = Plus / Plus
Query: 1 attccaaattttagctcacaaaggtcttcatatttgtcatagatacatagtgagtcttgt 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 201 attccaaattttagctcacaaaggtcatcatatttgtcatagatacatagtgagtcctgt 260
Query: 61 aagaacataagagaatccttggaaatatttaaaaatactgggatttttacctataaaatc 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaacataagagaatgcttggaaatatttaaaaatactgggatttttacctataaaatc 320
Query: 121 agagaatttcacaccaactttacctttcattggctggtgtaatagctagcaaaattatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagaatttcacaccaactttacctttcattggctggtgtaatagctagcaaaattatat 380
Query: 181 gtcaccctgcccgatgatctgaatcaaatatgagttccaaagccccatgtagttgtaagc 240
|||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| ||
Sbjct: 381 gtcaccctgcccgatgatatgaatcaaatatgatttccaaaaccccatgtagttgtaggc 440
Query: 241 tatctctgatagaatagaatttcaaaaggtgtcctctaatcactacattcatgcttctcc 300
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatctctgaaagaatggaatttcaaaaggtgtcctctaatcactacattcatgcttctcc 500
Query: 301 cacataaatgcaaaaaaataaaaaataaataatttaacagcccaccaacaaaatatacat 360
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 501 cacataaatgcaaaaaaataaaaaa-aaa--atttaacagcccaccaacaaaatatacat 557
Query: 361 ttctaagcagtttactcaggtacttttaagtgtttctattaagtagacatgcagaccaat 420
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttctaagcagtttactaaggtacttttaagtgtttctattaagtagacatgcagaccaat 617
Query: 421 atctaataatatttataccaaaaatgcttattgttttttttttctactaaaagtattttc 480
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 618 atctaataatatttataccaaaaatgcttattgtttttttt--ctactaagagtattttc 675
Query: 481 acttaagaatatttttttcaggactggagagatggctcagga 522
||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 676 acttaagaatatttttt-caggactggagagatggctcagga 716
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
