BAC Information

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BAC

Clone NameMSMg01-377C17
Chromosome16 (Build37)
Map Location 35,285,851 - 35,286,282
singlet/doubletsinglet
Overlap geneAdcy5
Upstream geneKalrn, Ropn1, Ccdc14, Mylk, Ptplb
Downstream geneSec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377C17.T7 (MSMg01no377_c17.b1)MSMg01-377C17.TJ (MSMg01no377_c17.g1)
ACCAG482314AG482315
length782771
length of high quality
(start - end)		446 (42 - 487)436 (76 - 511)
definitionCHROMAT_FILE: MSMg01no377_c17.b1 PHD_FILE: MSMg01no377_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:15 2005CHROMAT_FILE: MSMg01no377_c17.g1 PHD_FILE: MSMg01no377_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCTCCTTTTACCCGAATGCATCCATTTCCCCCGTCTGATTTCCAGAGT
TTTTGAGAGGTCCCAGTGTTCTGATATGGCAATTCTGTGGTCACTCTGGG
CACAGGCTCTTGTGAACAAGGGCCAGACAGCTGTGTTCAGCTTCTTTATT
TTGTTGGCCTTCTCGGCTCCCACAAACAGCTCAGCTTCCGTCGCCAAATT
GTCCACCCTTTGTCCTTCTTGCCAAAAGATGCCCAAGGACGGGACTGAGT
GCTTGGCTGCCTTCCCCGTGTGCCAGAATTCCCCGTCTCTGTGGGAAGGG
CTCTGGCTGACCTTGGGTCACATCATCTTCCTGTTGTCCACCTGCTGCTG
TACACGGACAACCAGACTTCCTGGGAAGGTGGATTGAGTCCTGGGCCCGA
GGTCTGCTCTCACTTCTCCGGATATCAGCGGCTTTCAGAGCCCCACAGCC
CCAGACCTGCTTTTGGCTGCCACCATTACTGAGGGCAAATCGGTATGTAG
TCCTCCTGCCCGCCTTTGGGATTCCCGCCATGTTTGGATAAAACCTTATT
AGGTCCTCCTCCACCTCTTTCTATGTACAAAAAACTCATCGCGGGTGGGG
TAGGGCCATTTTACCCCCATGTTTATTCTTCCTCTTTTCCCCCTCCCTTT
TCCTCTTTTTCCTTACCCCCTTTTGTCATATTCTCTTCTCACCACCCTTT
TTTCTTTTTCCCCTCACTCCCACTTCCTATTC

CGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACGCCAGCCCACGCCACGTAGTGA
AACACTGCTCCAAAATGCCAAAGGCTGGTGGTGTAGCTCAGTGGTAGAGA
GCTTACCCACGGGTGGACCACATAAACAAAGCCCTGGGTTCAGTTCTCTG
GGCCACATATAAGGTCGGACTCCTAGATACAGGTGCCTAGAAAACTCCCA
AGATTTGGAAATAAAAGGTGACTTGTAAACTTTATGAAGTTTTTTTAGGT
TTCTTTATTTTCATTGTATCATGGGTGGGTGTTTTGCCTGCCTATGTCTG
AGCACCACGTGCAAAGCTGGAAGAGGGCATTAGATCCCTGGAGCTCTAGC
CACAGACTGGTGGGAGCTGCTATGTGGGTGCTGGTCCTCTGGAACCCTGG
TCCTCTGGACGAGCAACAAAGCTCTTAACCATCCAGCCCCCAGTTGGTAA
GCTTATGCCATAGTTAGCACTGTGTAAGACATTCACCTGAAGGCCATCTG
CTGCACTGGGGAGAGCTGCCCTTATTCTATTCTTTCAGAACCCTGTTCGT
AATTAGGGAGGCTGTCAATGATCTATCTTTTTGTTGATCACCAAAAGGGA
AATCTGGCTGTAACTTGGTTCTAATTTTGGCACTTTTCTCCCCCCCTTCG
TTTTTCCTTTACTCACCCTTTTTTTTTTCCGCGTGGTGCGTGCGTTCCTC
CCACCTCCCCCAACTTGTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_c17.b1 MSMg01no377_c17.b1 CHROMAT_FILE:
MSMg01no377_c17.b1 PHD_FILE: MSMg01no377_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:15 2005
         (446 letters)



>mm_chr16_35285644_35286484
          Length = 841

 Score =  775 bits (401), Expect = 0.0
 Identities = 426/437 (97%), Gaps = 5/437 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctccttttacccgaatgcatccatttcccccgtctgatttccagagtttttgaga 67
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctccttttaccagaatgcatcaatttcccccgtctgatttccagagtttttgaga 267

                                                                       
Query: 68  ggtcccagtgttctgatatggcaattctgtggtcactctgggcacaggctcttgtgaaca 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ggtcccagtgttctgatatggcaattctgtggtcactctgggcacaggctcttgtgaaca 327

                                                                       
Query: 128 agggccagacagctgtgttcagcttctttattttgttggccttctcggctcccacaaaca 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 agggccagacagctgtgttcagcttctttattttgttggccttctcggctcccacaaaca 387

                                                                       
Query: 188 gctcagcttccgtcgccaaattgtccaccctttgtccttcttgccaaaagatgcccaagg 247
           ||||     ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gctc-----ccgtcaccaaattgtccaccctttgtccttcttgccaaaagatgcccaagg 442

                                                                       
Query: 248 acgggactgagtgcttggctgccttccccgtgtgccagaattccccgtctctgtgggaag 307
           ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 443 acgggactgagtgcttggccgccttccctgtgtgccagaattccccgtctctgtgggaag 502

                                                                       
Query: 308 ggctctggctgaccttgggtcacatcatcttcctgttgtccacctgctgctgtacacgga 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggctctggctgaccttgggtcacatcatcttcctgttgtccacctgctgctgtacacgga 562

                                                                       
Query: 368 caaccagacttcctgggaaggtggattgagtcctgggcccgaggtctgctctcacttctc 427
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 563 caaccagacttcctgggaaggtggattgagtcctggacccgaggtctgctctcacttctc 622

                            
Query: 428 cggatatcagcggcttt 444
           |||||||||||||||||
Sbjct: 623 cggatatcagcggcttt 639


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 841
Length adjustment: 10
Effective length of query: 436
Effective length of database: 831
Effective search space:   362316
Effective search space used:   362316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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