BAC Information

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BAC

Clone NameMSMg01-378G22
Chromosome16 (Build37)
Map Location 9,603,512 - 9,603,963
singlet/doubletsinglet
Overlap geneGrin2a
Upstream geneAbat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
Downstream geneLOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378G22.T7 (MSMg01no378_g22.b1)MSMg01-378G22.TJ (MSMg01no378_g22.g1)
ACCAG483280AG483281
length783768
length of high quality
(start - end)
474 (48 - 521)452 (78 - 529)
definitionCHROMAT_FILE: MSMg01no378_g22.b1 PHD_FILE: MSMg01no378_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:55 2005CHROMAT_FILE: MSMg01no378_g22.g1 PHD_FILE: MSMg01no378_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:18:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTGGGAATACTGGCTACTTGTGTCAGTGAGTTCAGTTGCTTCC
TTCCCAGTGATATGTTCAAGTTTTATTTATTTATTTATTTATTTATTTAT
TTATTTATTTATTTATATTTTAATTAGGTATTTTCTTCATTTACATTTCC
AATGCTATCCGAAAAGTCCCACATACCTCCCCTACCCCCTCCCACTCCGA
CTTCTTGGCACTGGCGTTCCCCTGTACTGAGGCATATAAAGTTTGCAAGA
CCAATGGGCCTCTCTTTCCACTGATGGCCAACTAGGCCATCTTCTGGTAC
ATATGAAGCTAGAGACATGAGCTCCGGGGGGTACTGGTTAGTTCATATTG
TTGTTCCATCTATAGGGTTGCAGACCCCTTTAACTCCTTGGGTACTTTCT
CTAGCTCCTCCATTGGGGGCACTGTGATCCATCCAATAGCTGACTGTGAG
CATCCACTTCTGTGTTTGTTAGGCCCCAGTATAGCCTCACAAGAGACAGC
TATATCAGGGTCCTGCCCAGCAAATCTTGCTAGTGTGTGCAATGGTGTCA
GTGTTTGGAGGCTGAATATGGGTTGGATCCCCTGATATGNTAGGCTCTAA
ATGGGCCATCCTTTCTTCTCACTTCCAAAATTTGTCTCTGTAATCCTTTC
ACGGGGGGTTTGTTCCCCCTTCCTAAAAGGGCAAAAGGGCCGCCCCTTTG
GCTCTCCTCTTCTTGAATAAACAGGGTTTGAAA
NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCTGCAGTCCCTAAGAATAA
AGATGCACTCATGTTTCCTTCATAATTCCTGCGTGTGTGCAGGCACATAT
GTGTGTGTCTCATCTATTGTATCAACCAAGACTTACTTTCCAAATTCTCT
ACTTTGGACAGGGATTTGACAGTTCCAACCTAATTGGTAGCTATGTAAGT
CAGAACTTGTGTGTCCTTCTGTGTTCACAAGATCAAGGCTGGGTTCTGGG
TAATAGAACCCACACAATCTCCTTAATTAGGAGCCTTAGAGGAGAGAGGC
AGGGAGACTTTGATTTGTACAATCAGAACATAATGCGGGAACTTGTGCCT
CTTCTGGGCTCTGATCAGGTTAGGAAGTGTCCATGGCCAAGTCCTGCCAC
TTTATAAAAATGGAGATCTATTGAATGACAAGTCCATCTGAGCATCAGGT
CTTAGCCACAGCATTCCTCACACTACAGGAACAAGACCGGGAGACTTCAA
TGGAAACTCCAGACCCTACAGATTTATTCTTTAGCCTTTTGCAGATGAAG
TTCCATGCACCCTGGCCCTGGGTATCTAGAGTCCCATCCCACTTAAAGAA
TGTGGAAAGGAATCACGGATCGGTGGATAGAAGGGGAAAAAACCACAGGG
GTTTTAACCCCTTTTCCTATTTGAGCGACTTAAGGTAGATCCCTGTAACC
AAACTCTCCATCTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_g22.g1 MSMg01no378_g22.g1 CHROMAT_FILE:
MSMg01no378_g22.g1 PHD_FILE: MSMg01no378_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:18:55 2005
         (452 letters)



>mm_chr16_9603312_9604163
          Length = 852

 Score =  866 bits (448), Expect = 0.0
 Identities = 451/452 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctgcagtccctaagaataaagatgcactcatgtttccttcataattcctgcgtgtg 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 652 attcctgcagtccctaagaataaagatgcactcatgttttcttcataattcctgcgtgtg 593

                                                                       
Query: 61  tgcaggcacatatgtgtgtgtctcatctattgtatcaaccaagacttactttccaaattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tgcaggcacatatgtgtgtgtctcatctattgtatcaaccaagacttactttccaaattc 533

                                                                       
Query: 121 tctactttggacagggatttgacagttccaacctaattggtagctatgtaagtcagaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tctactttggacagggatttgacagttccaacctaattggtagctatgtaagtcagaact 473

                                                                       
Query: 181 tgtgtgtccttctgtgttcacaagatcaaggctgggttctgggtaatagaacccacacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tgtgtgtccttctgtgttcacaagatcaaggctgggttctgggtaatagaacccacacaa 413

                                                                       
Query: 241 tctccttaattaggagccttagaggagagaggcagggagactttgatttgtacaatcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tctccttaattaggagccttagaggagagaggcagggagactttgatttgtacaatcaga 353

                                                                       
Query: 301 acataatgcgggaacttgtgcctcttctgggctctgatcaggttaggaagtgtccatggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 acataatgcgggaacttgtgcctcttctgggctctgatcaggttaggaagtgtccatggc 293

                                                                       
Query: 361 caagtcctgccactttataaaaatggagatctattgaatgacaagtccatctgagcatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 caagtcctgccactttataaaaatggagatctattgaatgacaagtccatctgagcatca 233

                                           
Query: 421 ggtcttagccacagcattcctcacactacagg 452
           ||||||||||||||||||||||||||||||||
Sbjct: 232 ggtcttagccacagcattcctcacactacagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)