Query= MSMg01no379_c09.b1 MSMg01no379_c09.b1 CHROMAT_FILE:
MSMg01no379_c09.b1 PHD_FILE: MSMg01no379_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:50 2005
(362 letters)
>mm_chr16_74215048_74215809
Length = 762
Score = 609 bits (315), Expect = e-179
Identities = 345/363 (95%), Gaps = 16/363 (4%)
Strand = Plus / Plus
Query: 8 gaattctcaatt--ttcgcttgactgcctagtgatagagaaatcccaagtggtaaaggat 65
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctcaattaat--gcttgactgcctagtgatagagaaatcccaagtggtaaaggat 265
Query: 66 atatcagtggttaaaggattcgtgtttcaattactggcacccacttgtgaattcatgatt 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atatcagtggttaaaggattcgtgtttcaattactggcacccacttgtgaattcatgatt 325
Query: 126 cgtttatgctggtttaccctgcactagatgtgtcaaatctattgggttttacaataagac 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cgtttatgctggtttaccctgcactagatgtgtcaaatctattgggttttacaataagac 385
Query: 186 aatgacttctgtttcaaaatatttgaggatgttctcaatattaatctttcatgttgataa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aatgacttctgtttcaaaatatttgaggatgttctcaatattaatctttcatgttgataa 445
Query: 246 gactagtgatccaacaaggtaaaatgttatttttta------gtatctgtaagacaacct 299
||||||||||||||||||||||||||||| | ||||||||| ||||||||
Sbjct: 446 gactagtgatccaacaaggtaaaatgtta------acacaaagtatctgtaggacaacct 499
Query: 300 tccattcactgacttcattgtgcttgaaagcgtgtgtcttatcataataccataaaattg 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 500 tccattcactgacttcattgtgcttgaaagcgtgtgtcttatcataataccagaaaattg 559
Query: 360 tca 362
|||
Sbjct: 560 tca 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space: 265809
Effective search space used: 265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no379_c09.g1 MSMg01no379_c09.g1 CHROMAT_FILE:
MSMg01no379_c09.g1 PHD_FILE: MSMg01no379_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:50 2005
(590 letters)
>mm_chr16_74388210_74389198
Length = 989
Score = 1031 bits (533), Expect = 0.0
Identities = 573/591 (96%), Gaps = 11/591 (1%)
Strand = Plus / Minus
Query: 4 caatctatcgtcttgccaatgtatttgactagacatcatagagtgttttcttcatgtgaa 63
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 677 caatctatcgtcttgccaatgtatttgactagacttcatagagtgttctcttcatgtgaa 618
Query: 64 attacaaacctgcagaaaaattaatgcttttacattgtttttgttaaaattccatcttct 123
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 617 attacaaacctgcagaaaaattaatgctcttacattgtttttgttaaaattccatcttct 558
Query: 124 attgtcacaataaaaaattaactacaatcagtagttaatttagttatattgttgccatag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 attgtcacaataaaaaattaactacaatcagtagttaatttagttatattgttgccatag 498
Query: 184 ttatctttatttttaaatgagcttaaaagaagactatattgttatatgtttttcagaaaa 243
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 497 ttatctttatttttaaatgagcttaaaagaaggctatattgttatatgtttttcag-aaa 439
Query: 244 aaagtaagatctagaaatttatttgaacttcttaggataaattttaagtatacaaaaagt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaagtaagatctagaaatttatttgaacttcttaggataaattttaagtatacaaaaagt 379
Query: 304 tatagcaaagccttttacaatttaaattttatgttacatttatttagctacaaataaaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tatagcaaagccttttacaatttaaattttatgttacatttatttagctacaaataaaaa 319
Query: 364 cagaagactagtaatgttttaaacgtaatagaagttattttattctaagacaaaaattga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 cagaagactagtaatgttttaaacgtaatagaagttattttattctaagacaaaaattga 259
Query: 424 agaagttttaaagaccttaaaaacttgggacagacaaaggcttgagtt-aaaaaaacagt 482
|| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 258 aggagtttttaagaccttaaaaacttgggacagacaaaggcttgagttaaaaaaaacagt 199
Query: 483 cattatcaccatcattatcattatcatcattg---tcatcatcatcatcatatcattgtt 539
|||||||||| |||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 198 cattatcacc------atcattatcatcattgtcatcatcatcatcatcatatcatcgtt 145
Query: 540 ttcaataataaatgtgcagtttctcactgagctgttttgattctctcttga 590
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ttcaataataaatgtgcagtttctcactgagctgttttgattctctcttga 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 989
Length adjustment: 10
Effective length of query: 580
Effective length of database: 979
Effective search space: 567820
Effective search space used: 567820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
