BAC Information

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BAC

Clone NameMSMg01-379L03
Chromosome16 (Build37)
Map Location 45,416,395 - 45,416,713
singlet/doubletsinglet
Overlap genenone
Upstream geneWdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905
Downstream geneGm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379L03.T7 (MSMg01no379_l03.b1)MSMg01-379L03.TJ (MSMg01no379_l03.g1)
ACCAG484246AG484247
length756756
length of high quality
(start - end)		522 (41 - 562)470 (70 - 539)
definitionCHROMAT_FILE: MSMg01no379_l03.b1 PHD_FILE: MSMg01no379_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:31 2005CHROMAT_FILE: MSMg01no379_l03.g1 PHD_FILE: MSMg01no379_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:20:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGCATATTGCCACACTATTGGCTTATTCAAACATCAGCAGAAAAATTAAA
TGTACGTGCAGGGTGTGAGAGTTCTGTGAGTTGTTGACTCAGTTCAGATA
GCCCTGTTATGTCCTCACATTCCTCCTTATCTTTATGGTCAAGATGTTCC
CAGGAATGTTTTAACTATGGGGCATACCCAGATTTGTTTTTCTTTTTTCA
CAGCCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAATTTCTGAGTAC
TTTATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCACCACGGACC
TTGTTCCAGCCTGTGTTTTCTTTGGTTGATGGCTCAGTCTCTGAAAATTC
CTAGGGGTCCAGGTTAGTTGACTCTGTTAGTCTTCCTGTGGGGTTCCCAT
CCCCTTGAAGGCCTTCAGTCCTTCTCCCAACTCTTCTATAAGAGTCCCTG
ATCTTATAGTTGCAATGTTTGGTTGTGGTTACCTGTGTCTGTTTCAGTCA
GCTGCTGGGTAGAGCCTCTCAGAGGACAGTTATACTAGGCTCCTGTCTGC
CAGCATAACAGAGTGTCATTAATAACATCTGAAATTGGTGTTTGCCCCTG
GGATGGGGTTTCCAGTTGGGGCACGTATTGGCTGGGCATTTCCTCTCTTT
TTCCTTCATTTTTGTCCCTGGGGTTCTTTTTAAAATTAAAATTTTTGGGG
CCATAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTAAGTTCCTAATATGTCTTTAAATATCAAA
GTCTTGGCAGATGTGGACTTTTCAAATATTTTCTTCTTTTCATAAGATGG
TCTTTCATGTTATTGGCAACTGTTTTCCATGTTGACCAGAAATGTTTTAG
TATCATGTAATTCATTTTCTGTTTTGATTTTGTTGTCTGAGCTTTTGGGA
TCTTGTCTGAATTGTCCTTATTGATTCCACTTTCCTGAATATTTTTCCCA
AGATTTGTTCTAGTGGTTTTATAATTCTATATTTATAGAGTTTTATATTT
ATATTTGATATTTATATTTAATACTCATAATTCTATATTTATAGAATTTG
ATATTTATATTTAATATATACTTGAAAACTATATAATGCAATATATTATA
TAGGTTTACAAATACAGTATTTGAACCTTCCCTCTAGTTGGATTTGATTT
TTGCAATTTCTGTGAGAGACAGCTCTAGTTTCACACTCTTTGCTGTGGGT
TATCCAATCCACAACACTATTCTTCGACAACACTGTGGTTTAACAGTACT
TGTGTGTGTGTGCGTGTGTGCGTGTCCGTCTCTCCTCTTCTTTTCCTCTT
ATTTCTCCCTTTTTCTCTTTCTTTCCTCCTTTTTTTTCTTCCCTCCTTCT
CCTTCTTCCTCCCCCCTCATTTCTTTTCCTCCTTTTCCCCCCCTCCCCTT
TCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_l03.g1 MSMg01no379_l03.g1 CHROMAT_FILE:
MSMg01no379_l03.g1 PHD_FILE: MSMg01no379_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:20:31 2005
         (470 letters)



>mm_chr16_45415844_45416713
          Length = 870

 Score =  617 bits (319), Expect = 0.0
 Identities = 319/319 (100%)
 Strand = Plus / Minus

                                                                       
Query: 152 gttttgattttgttgtctgagcttttgggatcttgtctgaattgtccttattgattccac 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 gttttgattttgttgtctgagcttttgggatcttgtctgaattgtccttattgattccac 811

                                                                       
Query: 212 tttcctgaatatttttcccaagatttgttctagtggttttataattctatatttatagag 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tttcctgaatatttttcccaagatttgttctagtggttttataattctatatttatagag 751

                                                                       
Query: 272 ttttatatttatatttgatatttatatttaatactcataattctatatttatagaatttg 331
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 ttttatatttatatttgatatttatatttaatactcataattctatatttatagaatttg 691

                                                                       
Query: 332 atatttatatttaatatatacttgaaaactatataatgcaatatattatataggtttaca 391
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 atatttatatttaatatatacttgaaaactatataatgcaatatattatataggtttaca 631

                                                                       
Query: 392 aatacagtatttgaaccttccctctagttggatttgatttttgcaatttctgtgagagac 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 aatacagtatttgaaccttccctctagttggatttgatttttgcaatttctgtgagagac 571

                              
Query: 452 agctctagtttcacactct 470
           |||||||||||||||||||
Sbjct: 570 agctctagtttcacactct 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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