TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGAGTGTCCCCATTATGTGATGGCCCTCAGCATAATAAAGTATAGCT
TTTGCTATAGTATGTATAGCTACCTTCCTGCAGGTGACAGACAGCCCTGT
AACAAGTAGCGAGGGTGCAGATGCAGGGTGAACCTGGAGAGGGCTGCTTT
GATGTTAATTAGGCACAGTTAAATTAGACATGTTAATTAGGCCAGTTGTC
CCAGCTTTGAAACCTAACAATAATGAAACCTGTATCTTGAACAATGAATG
TGTTAAAAAAAAAAGTTCTTGAAAAAAGAACCCTAGGTTCTCATGGATCC
ATCCAGGCCAGGATGTGCTGGGCTGTGTAAGCCATTTTCAGGGTCCGGCG
AGGAGCAAAGAGCATGCCTACCAGCTTGGCCTTCAGTAACAGGTTATTCC
TCACCTTCTCATCCAACTCCTTTCTAAATGTTTAGAACATAAGCAAAAAG
CCAAAATAAGCAGGAAGAAAACAACGCCCATTTACTGATCACCTTCAGAG
ACCCCAAATGTTTTTTCAAAATCCTTTTACATCCACTGAAGGAGACAAGT
GAAATTTCCCTAGTTGCCAATATCTTCTCATTGTTACTTAATTTCACTAT
CTTGTAGCACTATCTTGACTAATTGCTTACTTTTCATTTTCTGAGAGNGG
AGTGCTAAAGCCTCACCGACCTTAACACTGAAGGAN

TCAATAAACGAANAAAGGCTAAATCTCNAGAATANNNNCCTGANNNAATT
TCCGCGNAATTCCAAGGNCACACATCAAAGGATTACCTGCAGNCTAGAAA
ACCTGTTTCTGCTANAGCANGAGACAGATCGTCGGCCTGCTGCTGTGNAC
AGCCAAAGCAACCACATCCCACACCTGGGATTCAAACGAAAGCACCTTCT
TATAAAATTCTTCATTTTCTAANAAACCNAAAGGCAGATTCCTCAAAACC
TCCCACCTTGAGGTGGGCTGAAATGTCTGAAGGCAAGCTTCTTGGAACCT
GGTTGCGAATGCAAAATTTTGTAATCTTTAAGGCCCAAGGCTCTTTTAAA
TCCAAAGGAAGGGGGGGGGGAAACACCCCGTTTCCCAAAAGGCCCCCGGG
GGAAAAAAAAAGTTTAAAACACCCCNGGGGGCCCCAACCCCGGGTTTTCC
GGAGAAAAAAAGGTTTCTCCCCCCCCTCTTTGGAGAAAAGGGGGCACACC
CCCCCCCGGTTTCCCCCNNAAAAAAAGGGAAAAAAAAATGGGGCCCCCCC
CCCCCCCCCNNNTTTTTTTCCCCAAAAAAAAAAACAAACCCCCCCCTTTG
CCCCCCCGCCCCCCCCCCCCTTTCCCCCCCTCCCCCCCCAAAAAAAANNT
CCNNTTTNTCTTTTTTTTTCAACAAACACCCCCCCCCCCCTCTTTCCCCC
GGGGGGGGGGGG

Query= MSMg01no380_e23.b1 MSMg01no380_e23.b1 CHROMAT_FILE:
MSMg01no380_e23.b1 PHD_FILE: MSMg01no380_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:21 2005
         (565 letters)



>mm_chr16_35037172_35038136
          Length = 965

 Score = 1021 bits (528), Expect = 0.0
 Identities = 552/560 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gtgatggccctcagcataataaagtatagcttttgctatagtatgtatagctaccttcct 65
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 965 gtgatggccctcagcataataaagtatagcttttgctaaagtatgtatagctaccttcct 906

                                                                       
Query: 66  gcaggtgacagacagccctgtaacaagtagcgagggtgcagatgcagggtgaacctggag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 gcaggtgacagacagccctgtaacaagtagcgagggtgcagatgcagggtgaacctggag 846

                                                                       
Query: 126 agggctgctttgatgttaattaggcacagttaaattagacatgttaattaggccagttgt 185
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 845 agggctgctttgatgttaattaggcacagttaaattaggcatgttaattaggccagttgt 786

                                                                       
Query: 186 cccagctttgaaacctaacaataatgaaacctgtatcttgaacaatgaatgtgttaaaaa 245
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 785 cccagctttgaaacctaacaataatgaaatctgtatcttgaacaatgaatgtgttaaaaa 726

                                                                       
Query: 246 aaaaagttcttgaaaaaagaaccctaggttctcatggatccatccaggccaggatgtgct 305
           || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 725 aataagttcttgaaaaaagaaccctaggttctcatggatccgtccaggccaggatgtgct 666

                                                                       
Query: 306 gggctgtgtaagccattttcagggtccggcgaggagcaaagagcatgcctaccagcttgg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 gggctgtgtaagccattttcagggtccggcgaggagcaaagagcatgcctaccagcttgg 606

                                                                       
Query: 366 ccttcagtaacaggttattcctcaccttctcatccaactcctttctaaatgtttagaaca 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ccttcagtaacaggttattcctcaccttctcatccaactcctttctaaatgtttagaaca 546

                                                                       
Query: 426 taagcaaaaagccaaaataagcaggaagaaaacaacgcccatttactgatcaccttcaga 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 taagcaaaaagccaaaataagcaggaagaaaacaacgcccatttactgatcaccttcaga 486

                                                                       
Query: 486 gaccccaaatgttttttcaaaatccttttacatccactgaaggagacaagtgaaatttcc 545
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gaccccaaatgtttttccaaaatccttttacatccactgaaggagacaagtgaaatttcc 426

                               
Query: 546 ctagttgccaatatcttctc 565
           ||||| |||||||| |||||
Sbjct: 425 ctagtagccaatattttctc 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)