BAC Information

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BAC

Clone NameMSMg01-382E11
Chromosome16 (Build37)
Map Location 68,888,152 - 68,888,648
singlet/doubletsinglet
Overlap genenone
Upstream geneEG626609
Downstream geneSpeer2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382E11.T7 (MSMg01no382_e11.b1)MSMg01-382E11.TJ (MSMg01no382_e11.g1)
ACCAG486219AG486220
length757774
length of high quality
(start - end)
561 (24 - 584)499 (57 - 555)
definitionCHROMAT_FILE: MSMg01no382_e11.b1 PHD_FILE: MSMg01no382_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:59 2005CHROMAT_FILE: MSMg01no382_e11.g1 PHD_FILE: MSMg01no382_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCACTATTTCGAGAGGATCCGCGGAATTCTTTGTTTTGC
TCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTT
CTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAGGAT
AGGTAAAGATTCTTTCCTAATCTGTTGGTGGCCTTTTTGTCTTATTGAAG
GTGTCTTTTGCCTTACAGAAGCTTTGCAGTTTCATGAGGTCCCATTTGTC
AATTCTTGATCTTATAGAACAAGCCATTGCTGTTCTATTCAGGAATTTTT
TCCCTGTGTCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAAGT
TTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTTGAC
CTTAGTACAAGGAGATAGGAATGGATCGATTCGCATTCTTCTACATGTTA
ACAACAAGTTGTGCCAGCATCATTTGTTGAAAATGCTGTCTTTCTTCCAC
TTGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGG
GTTCATTTCTGGGTCTTCAATTATATTTTTTTTGTCTACTTGTCTGTCAT
TATACCAGTATCATGCAGNTTTTTAATCACATTTGCTCTGTAGTATAGCT
TTTTGTCAAGCATGGGGAGTCCCCCAAAGGTTCTTTTTATATTTGAAAGA
AGTTTTTGTTATTTTACACTTTTTGTTATTCCAAAGGAAATTCCATTTTT
TAAATTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTGTTTAGCTCTGTGCCCCATTTTTTAATGGGGTTATTTCTGG
AGTTCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCCCTATTA
AATTTAGGATTGGTAAAAATCTTTTCCCAATCTGTTGGTGGCCTTTTTGT
CGTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATGAGGT
CCCATTGGTCAATTCTTTATTTTACCGCACAAGCCATTACTGTTCTGTTT
AGGAATTGTTCCCCTGTGCCCATATCTTCGAGGCTTTTCCCTATTTATTC
CTCTATTAATTTCAGTGTCTCTGGTCTTATGTGGAGGTCTTTGATCCACT
TAGACTTGAGCTTTGTACAAGGAGATAAGAACAATTCGGAAAGCAAGCAG
CTTGTCTCAGCGACCTGGAGCAGCCTTGCTTGCAGAGCCATCACCATGCC
CCTGGCTAGAGATCTATTACACCCTTCCTTGGAAGAGGAGAAGAAAAAAA
AAAACATAAGAAGAAACAGCTGGGTTAGAGCCCCAATTCTTACTTCATGG
ATGTGAAATGCCCAGGTTGCTACAAGATTATTACAGTTTTCAGCCATGTG
AAGAATGTGGTTCTTTTGGGTGGGTTGGTCAAATGGCGTTGGGGCCCCCC
CCCGGAAGGAAAAGACCTGCTTCTCAAAAAGTTTTTTCTTTTTTAAAAAT
ACCCCTTTTGTTGTTTATCATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_e11.g1 MSMg01no382_e11.g1 CHROMAT_FILE:
MSMg01no382_e11.g1 PHD_FILE: MSMg01no382_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:59 2005
         (499 letters)



>mm_chr16_68887952_68888850
          Length = 899

 Score =  930 bits (481), Expect = 0.0
 Identities = 493/497 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttagctctgtgccccattttttaatggggttatttctggagttcagcttcttgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttagctctgtgccccattttttaatggggttatttctggagttcagcttcttgag 260

                                                                       
Query: 61  ctctttgtatatattggatattagtcccctattaaatttaggattggtaaaaatcttttc 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ctctttgtatatattggatattagtcccctattagatttaggattggtaaaaatcttttc 320

                                                                       
Query: 121 ccaatctgttggtggcctttttgtcgtattgacagtgtcttttgccttacagaagctttg 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaatctgttggtggcctttttgtcttattgacagtgtcttttgccttacagaagctttg 380

                                                                       
Query: 181 caattttatgaggtcccattggtcaattctttattttaccgcacaagccattactgttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caattttatgaggtcccattggtcaattctttattttaccgcacaagccattactgttct 440

                                                                       
Query: 241 gtttaggaattgttcccctgtgcccatatcttcgaggcttttccctatttattcctctat 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtttaggaatttttcccctgtgcccatatcttcgaggcttttccctatttattcctctat 500

                                                                       
Query: 301 taatttcagtgtctctggtcttatgtggaggtctttgatccacttagacttgagctttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatttcagtgtctctggtcttatgtggaggtctttgatccacttagacttgagctttgt 560

                                                                       
Query: 361 acaaggagataagaacaattcggaaagcaagcagcttgtctcagcgacctggagcagcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaggagataagaacaattcggaaagcaagcagcttgtctcagcgacctggagcagcct 620

                                                                       
Query: 421 tgcttgcagagccatcaccatgcccctggctagagatctattacacccttccttggaaga 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgcttgcagagccatcaccatgcccctggctagagatctattacacccttccttggaaga 680

                            
Query: 481 ggagaagaaaaaaaaaa 497
           |||||||||||||||||
Sbjct: 681 ggagaagaaaaaaaaaa 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)