BAC Information

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BAC

Clone NameMSMg01-382G04
Chromosome16 (Build37)
Map Location 82,275,293 - 82,275,717
singlet/doubletsinglet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382G04.T7 (MSMg01no382_g04.b1)MSMg01-382G04.TJ (MSMg01no382_g04.g1)
ACCAG486301AG486302
length741847
length of high quality
(start - end)		498 (58 - 555)491 (171 - 661)
definitionCHROMAT_FILE: MSMg01no382_g04.b1 PHD_FILE: MSMg01no382_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:07 2005CHROMAT_FILE: MSMg01no382_g04.g1 PHD_FILE: MSMg01no382_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCATATACGACTCACTATATTCCAGAGGATCCGCGGAATTCCAGGAC
AGTTCCCGCTATACAGAGAAACCCTGCATCAAAACAAAAACAAACAAACA
AAACAAAAACAAACAAACTCTCATTCTTATACTCAGTTCTCTGAATTTTA
ATGTATTACAATATGTACAATTTTACTTTTACTTTTATGTTTTCCTCATA
TTGTTCTGTGCTTTAGAGATACTACCAGCTTATTTACAATAGCCAGAAGC
CGGAAAGAATCCAGATTCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATTTACACAATGTAGTACTACTCAGCTATTAAAAAGAATAAATTTAT
GAAATTCCTAGGCAAATAGATGGACCTGGAGGGCATCATCCTGAGTGAGG
TAACCCAATCACAAAAGAACACACACAATATGTACTCACTGATAAGTGGA
TATTAGCCCAGAAACTTAGAATACCCAAGATATAAGATACAATTTGCTAA
ACACATGAAATTCAAGAAGAACAAAGACCAAAGTGTGGACACTTTGCCCC
TTCTTATAATTGGGAACAAAACACCCATCCAAGGAGTTGCAGAGACACAG
TTTGGGGCTGATACAAAAGGATGGACCATCTAGAGACTGCCATATCCGGG
AATCCATCCCATAATCAGCTTTCCAAAGCTGACACCATTGCATACTCTAA
CTATATTTTGCTGAAAGGACCCTTATATAGCTGTCTCCTGG

GATGAGGGGATGTGGTAGAGAGAGGNAGAGATGGGAGAGGGAGTGAGGGG
TGTGTGGGGTGGAGGTGAGGTGGTGAGAGGTGGGATGGAAGGNCGCAATG
GTAGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGGTTAGCTCTGTTCCCCATTTAAATAG
GGTTATTTGGTTCTCTGGAGTCTACCTTCTTGAGTTCTTTGTATATATTG
GCTATTAGCCCTCTATTGGATGTAGAAATGATAAAGATCTTTTCCTAATG
TGTTGGTTGCCATTTTGTCCTATTGATAGTGTCCTTTGTCTTACAATGTG
GAGCAGAGACTGCCCCACTTGGGGATCCATCCCATATACAGTAACCAAAC
CCAGACACTATTTTGAATGCCAACAAGTGCTTGAGGACAGAAGCCGGATA
TAGCTGTCTCCTAAGAGGCTCTGAGAAAGCCTGAGAAATATAGAGGAGGA
AGCTTGCAGCCAAACATTGGACTGAGCTCAGGAGTCCCTGATGAGAGGAG
ATGAAGAAGGAACTGAAGGAGCTGAGGGAGTTTCTAGCCCCACGGAGGGA
GCAACAATGTCAACAAGCCAGACACCCCCAGAGCTCCCTTGGACTAGACC
ACCAACATAAGAATACACATGGAGTGATCCATGGAGCTGACCACATATGA
TTGGTTTTGTTGGACATCAGGTTGAAGGAGAGGCCCTTGGGCCTGGATGA
GTCGCTTGTCACCAGGTATTGGCAAGCCTTATTGGGCTTATATCGTTTTT
CACTGTTCGTTTTTTCTATCATTTCTCTATTTTTTTTTTTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_g04.b1 MSMg01no382_g04.b1 CHROMAT_FILE:
MSMg01no382_g04.b1 PHD_FILE: MSMg01no382_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:07 2005
         (498 letters)



>mm_chr16_82275293_82276190
          Length = 898

 Score =  764 bits (395), Expect = 0.0
 Identities = 416/425 (97%), Gaps = 4/425 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctatacagagaaaccctgcatcaaaacaaaaacaaacaaacaaaacaa----aaacaaa 56
           |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 425 gctatacagagaaaccctgcatcaaaacaaaaacaaacaaacaaaacaaaaacaaacaaa 366

                                                                       
Query: 57  caaactctcattcttatactcagttctctgaattttaatgtattacaatatgtacaattt 116
           |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 365 caaactctcattcttatactcagttctctgaattttaatgaattacaatttgtacaattt 306

                                                                       
Query: 117 tacttttacttttatgttttcctcatattgttctgtgctttagagatactaccagcttat 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tacttttacttttatgttttcctcatattgttctgtgctttagagatactaccagcttat 246

                                                                       
Query: 177 ttacaatagccagaagccggaaagaatccagattccctcaacagaggaatggatacagaa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttacaatagccagaagccggaaagaatccagattccctcaacagaggaatggatacagaa 186

                                                                       
Query: 237 aatgtggtacatttacacaatgtagtactactcagctattaaaaagaataaatttatgaa 296
           |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 185 aatgtggtacatttacacaatgaagtactactcagctattaaaaagaatgaatttatgaa 126

                                                                       
Query: 297 attcctaggcaaatagatggacctggagggcatcatcctgagtgaggtaacccaatcaca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 attcctaggcaaatagatggacctggagggcatcatcctgagtgaggtaacccaatcaca 66

                                                                       
Query: 357 aaagaacacacacaatatgtactcactgataagtggatattagcccagaaacttagaata 416
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  aaagaacgcacacaatatgtactcactgataagtggatattagcccagaaacttagaata 6

                
Query: 417 cccaa 421
           |||||
Sbjct: 5   cccaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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