Query= MSMg01no382_l05.b1 MSMg01no382_l05.b1 CHROMAT_FILE:
MSMg01no382_l05.b1 PHD_FILE: MSMg01no382_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:31 2005
(581 letters)
>mm_chr16_93132267_93133245
Length = 979
Score = 1021 bits (528), Expect = 0.0
Identities = 561/578 (97%), Gaps = 11/578 (1%)
Strand = Plus / Minus
Query: 4 ggaattccatgatagtcggtcaaagtaaactggtaggcttaattgagctaaattattttc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ggaattccatgatagtcggtcaaagtaaactggtaggcttaattgagctaaattattttc 528
Query: 64 cttctactaaacatgtttaaactcatattggggaaaaaaaagtttggatggctttccctt 123
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 527 cttctactaaacatgtttaaactcatattgggg--aaaaaagtttggatggctttccctt 470
Query: 124 cagggtatagcgtccatcctgcctctccttacgtacacaagaaaactgggttaagcttct 183
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cagggtatagcgtacatcctgcctctccttacgtacacaagaaaactgggttaagcttct 410
Query: 184 tatttcccccctcttcaagattattcttggcaactctctgggaaaatctgttagcttgtc 243
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tatttcccccctctttaagattattcttggcaactctctgggaaaatctgttagcttgtc 350
Query: 244 aagataaattttacaagaagtatcccaggttatgaaaactatggcaaaatttcccagaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aagataaattttacaagaagtatcccaggttatgaaaactatggcaaaatttcccagaga 290
Query: 304 taaaggggctttgcagacccagagtttcagatgtgcttacggctgatgtgtatgtgtgta 363
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 289 taaaggggctttgcagacccagagtttcagatgtgcttacggctgatatgtatgtgtgta 230
Query: 364 ccagggagacctgggatatttagaatatttagaatgtcttggaagctagaggtagcttcc 423
||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 229 ccagggagacctggg---------atatttagaatgtcttggaagctagaggcagcttcc 179
Query: 424 attgctttattttatttttcatgtaatacatcctgtcgtgaaggaggatttacggtttga 483
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 178 attgctttattttatttttcatgtaatagatcctgtcgtgaaggaggatttacagtttga 119
Query: 484 aaatgtacctggcaaaatgggtgtgctcaaaatgttttgagtggtcatgttgtgtgatgc 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 aaatgtacctggcaaaatgggtgtgctcaaaatgttttgagtggtcatgttgtgtgatgc 59
Query: 544 tcagaggaccttctgtggactcccatctgatatagcca 581
||||||||||||||||||||||||||||||||||||||
Sbjct: 58 tcagaggaccttctgtggactcccatctgatatagcca 21
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 979
Length adjustment: 10
Effective length of query: 571
Effective length of database: 969
Effective search space: 553299
Effective search space used: 553299
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no382_l05.g1 MSMg01no382_l05.g1 CHROMAT_FILE:
MSMg01no382_l05.g1 PHD_FILE: MSMg01no382_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:31 2005
(530 letters)
>mm_chr16_92962970_92963897
Length = 928
Score = 990 bits (512), Expect = 0.0
Identities = 525/530 (99%), Gaps = 2/530 (0%)
Strand = Plus / Plus
Query: 1 tttaaggagcctcaatcgctgaaggaagagctccatgtggcactatgagtggcatttaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaggagcctcaatcgctgaaggaagagctccatgtggcactatgagtggcatttaga 260
Query: 61 gagaacagtctcagacagtgacacagtgctgaggccagcgcccacccgtctagcctactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaacagtctcagacagtgacacagtgctgaggccagcgcccacccgtctagcctactc 320
Query: 121 tccagctcaaataaggctggatggaagcaggctaatgtttcaagagatttcactccaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccagctcaaataaggctggatggaagcaggctaatgtttcaagagatttcactccaggc 380
Query: 181 agtgaacctgtctctgcctcctgcacctacacagaagcttttgatacaaactagtgagga 240
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 agtgaacctgtctctgccccctgcacctacccagaagcttttgatacaaactagtgagga 440
Query: 241 gccgtgctcccaaagaagcagggacacttcaaagagccgggcctaagctttgatcacagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccgtgctcccaaagaagcagggacacttcaaagagccgggcctaagctttgatcacagg 500
Query: 301 agagacccaaagactctttacttttctgtctctctttagggttgggaagcaaagtggggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagacccaaagactctttacttttctgtctctctttagggttgggaagcaaagtggggg 560
Query: 361 ccttggtgtgagttcctgttctcaaggttaaactctgtctaaagaggagccagccaggga 420
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttggtg--agttcctgttctcaaggttaaactctgtctaaagaggagccagccaggga 618
Query: 421 agaaaatggactctctccaagccatgaatggaggttaaccctcagaagggacactataag 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agaaaatggactctctccaatccatgaatggaggttaaccctcagaagggacactataag 678
Query: 481 actccaccaactgaaaagacacactattttgtccttcttaagtgaatgcg 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 actccaccaactgaaaagacacactattttgtccttcttaagtgaatgcg 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 928
Length adjustment: 10
Effective length of query: 520
Effective length of database: 918
Effective search space: 477360
Effective search space used: 477360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
