BAC Information

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BAC

Clone NameMSMg01-385O13
Chromosome16 (Build37)
Map Location 82,298,298 - 82,298,585
singlet/doubletsinglet
Overlap genenone
Upstream geneNcam2, LOC621470, LOC435484, Pgk1-ps1
Downstream geneEG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385O13.T7 (MSMg01no385_o13.b1)MSMg01-385O13.TJ (MSMg01no385_o13.g1)
ACCAG488999AG489000
length745742
length of high quality
(start - end)		496 (56 - 551)538 (61 - 598)
definitionCHROMAT_FILE: MSMg01no385_o13.b1 PHD_FILE: MSMg01no385_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:36 2005CHROMAT_FILE: MSMg01no385_o13.g1 PHD_FILE: MSMg01no385_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGCGCTAAACGACTCACTATTTCGAGAGGATCCGCGGAATTCACTCCTA
TCCACTCCCATTCTCGGGGTGTAATAGTGGGGTGATGGGCAAGCAACGAA
TCGGGAGCTGTCACGCCATATCAGGTGCTGAAACGTCACGCTGCGGGTTA
TAAAAGCAGCGCCATTTTCCCGGTTCGGAATCTTCCTGAGAAGCAAGCAA
TAAAGCTTTTTCCGCGGAAGATTCTGGTTTGTTGCGTCTTTCTTGCCGGT
CAAGTGGGACGCAATAGGTAAGTACTGTAAGTCATAAATTTTGTTTATAT
TATGAGATATTTAATTATTACATATTAGAAATTTTATGAGAGCAAGGATA
AATATACAATGAGGAATGTTTTATCCTAACAGAACCCTTCCACCATTACT
GACATCCATCTTGGAGTGAGAACAATTTCAAAAGTCATTTAGTGAGTTTG
CCATATTCAGTATGATTATTCACTCTGATGTGGGGCTGATTCATTGTCCT
AACTAATTCTATTTAATATCTAAATCCATTCTGCTTCTCTAATTTTCTTA
TCCTCTTATGTCACTTCTGCTTCAGTTATTCAGAAATCATCAGGTTGATT
GATACTTGTCCGTATGGAAATGAATTANAATCATCCCTTAATATTGCTAA
GCCCTACAGAGAAAATAACTCTGGAGTGAGCACCCCCTGAAAATGAAAAC
AATTTTCTCCCAGAAAAACTGAAGTTCCCTTTTTATAACGCCGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCTGGTTAGCTCTGTTCCCCATTTAAATAGGGTTATTTGG
TTCTCTGGAGTCTACCTTCTTGAGTTCTTTGTATATATTGGCTATTAGCC
CTCTATTGGATGTAGAAATGATAAAGATCTTTTCCTAATGTGTTGGTTGC
CATTTTGTCCTATTGATAGTGTCCTTTGTCTTACAATGTGGAGCAGAGAC
TGCCCCACTTGGGGATCCATCCCATATACAGTAACCAAACCCAGACACTA
TTTTGAATGCCAACAAGTGCTTGAGGACAGAAGCCGGATATAGCTGTCTC
CTAAGAGGCTCTGAGAAAGCCTGAGAAATATAGAGGAGGAAGCTTGCAGC
CAAACATTGGACTGAGCTCAGGAGTCCCTGATGAGAGGAGATGAAGAAGG
AACTGAAGGAGCTGAGGGAGTTTCTAGCCCCACGGAGGGAGCAACAATGT
CAACAAGCCAGACACCCCCAGAGCTCCCTTGGACTAGACCACCAACATAA
GAATACACATGGAGTGACCCATGGAGCTGACCACATATGATGGCTTTGTT
GGACATCAAGGGGGAGGAGAGCCCCTTGGGCCTGATGGTGTTCCATGCCT
CCGCGTAGGGTAATGCCCTACGGCGCAAAAGATGGTATGTGCTTATTTTC
CTTTCCCCTCCCTTAATTTTCCCCCCGCCTTTTTCCCCTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_o13.b1 MSMg01no385_o13.b1 CHROMAT_FILE:
MSMg01no385_o13.b1 PHD_FILE: MSMg01no385_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:36 2005
         (496 letters)



>mm_chr16_82297887_82298783
          Length = 897

 Score =  509 bits (263), Expect = e-148
 Identities = 282/289 (97%), Gaps = 3/289 (1%)
 Strand = Plus / Minus

                                                                       
Query: 210 taggtaagtactgtaagtc--ataaattttgtttatattatgagatatttaattattaca 267
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 699 taggtaagtactgtaagtcatataaattttgtttatattatgagatatttaattattaca 640

                                                                       
Query: 268 tattagaaattttatgagagcaaggataaatatacaatgaggaatgttttatcctaacag 327
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tattagaaattttatgattgcaaggataaatatacaatgaggaatgttttatcctaacag 580

                                                                       
Query: 328 aacccttccaccattactgacatccatcttggagtgagaacaatttcaaaagtcatttag 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 579 aacccttccaccattactgacatccatcttggagtgagaacaatttcaaaa-tcatttag 521

                                                                       
Query: 388 tgagtttgccatattcagtatgattattcactctgatgtggggctgattcattgtcctaa 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgagtttgccatattcagtatgattattcactctgatgtggggctgattcattgtcctaa 461

                                                            
Query: 448 ctaattctatttaatatctaaatccattctgcttctctaattttcttat 496
           | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 460 cgaattctatttaatatctaaatccattctgcctctctaattttcttat 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 897
Length adjustment: 10
Effective length of query: 486
Effective length of database: 887
Effective search space:   431082
Effective search space used:   431082
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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