BAC Information

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BAC

Clone NameMSMg01-386I03
Chromosome16 (Build37)
Map Location 62,078,059 - 62,078,305
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043524, LOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386I03.T7 (MSMg01no386_i03.b1)MSMg01-386I03.TJ (MSMg01no386_i03.g1)
ACCAG489459AG489460
length737791
length of high quality
(start - end)
247 (74 - 320)89 (64 - 152)
definitionCHROMAT_FILE: MSMg01no386_i03.b1 PHD_FILE: MSMg01no386_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:20 2005CHROMAT_FILE: MSMg01no386_i03.g1 PHD_FILE: MSMg01no386_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGCTGCGCGGA
ATTCCAGGTTTCTGCCATGAAATTTGGGTATGGATCACTGTGGCACAGGA
TATGCAAATGGAAACCAGAAAGCAAAATGACAGATTTTCAATTTTCAACT
TGGCACACTCAGCTGTAAGACCATGCCCCCTTCTTTGATGAGACACAACA
AATAGTCTCACACTTCAACAAAACATTTTCTTTGTTTAGTAAGTTTGAGT
CTTTTCTGAAAAGTATGAACTGAAATTCCCACATAGTTAAAGTGTGATTG
ACATAAGAATGGGTGAACCCTTTTTTTTATCCATCCCACAATCACCTTCC
AAACGCTGACAGCTGACACCATTGCATACGCCAGCAAGATTTTGCTGAAA
GGACCCTGATATACTGTCTCTTGTGAGGCTATGCCAGTGCCTCACATCCA
CAGAAGTGGATGCTTACAGTCAGCTATTGGATGGAACACAGGGCCCCCAA
TGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAACCCTG
TAGGTGCAACAACAATATGAACTAACCAGTACCCCAAAGCTCATGTCTCT
AGCTGCACATGTATCAGAAGATGGCCTACTTGGCCATCATTGGGAAGAGA
GGCTCTTTGTGCCTGCAAACTTTATATGCCCCAGTACAGGGTAACGCCAG
GGCCAACAATTGGGAGTGTTGCCTTATGCTTAAGTGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCTTATGGATTTCAAGGTTTTCTTTAANTACTCTG
AATGNAATGNCACTATCAACCATATTTGTAATTTCATGTTCTTAACCTTC
CTTCANTTTAAATGNTTTTTTCATCAATAATTTCTTGAAAGTAATGTATT
TAAAACGCCATATTTACAGNGNCTGTGTGTTATATTTCCTGCGTAGGAGG
GTTTTATTCCAAATCACAAANATATTTAAAAAATTCTGAAGTTTCATTTT
CGGGGGTGCCCTTTTTTTATCAAACATANNNATNNAAAAAAANNNNACAA
ATTATAACTTAAAACATGTTCTCCCCCCANNCNAAACCCCCCTAACACCC
CCCNNANCCTTTTACATATCTCTCTTCTTTTTTTTTTTTTTGGGGGAAAC
AACTAANNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNGTATNGG
TGGGTGGGTTGTGGAGCCGCCCCNNNNNNNNNNNCNNTTNNTCNNNNNNN
CNNNNNNNNNNNTATTATATTAAACCNCCNTTGGTTTTGTTGTCCTCGNN
NNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNTTNTNNNTNNNTNNNTNN
TTNTTTTNNTNNGTGTTTGTTTGTGTGTTGTTTTTTAAAAATAAAAAAAA
AACCAACCCTTNNNNNNNNNNNTNNNNTANNNNCNNTTNTNCTNTTTTTN
NNTCTTTTTTCCTNCCTTCTCCTTTTTTTTTAGGGTGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_i03.b1 MSMg01no386_i03.b1 CHROMAT_FILE:
MSMg01no386_i03.b1 PHD_FILE: MSMg01no386_i03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:20 2005
         (247 letters)



>mm_chr16_62077859_62078505
          Length = 647

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgggtatggatcactgtggcacaggatatgcaaatggaaaccagaaagcaaaatgacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgggtatggatcactgtggcacaggatatgcaaatggaaaccagaaagcaaaatgacag 260

                                                                       
Query: 61  attttcaattttcaacttggcacactcagctgtaagaccatgcccccttctttgatgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttcaattttcaacttggcacactcagctgtaagaccatgcccccttctttgatgaga 320

                                                                       
Query: 121 cacaacaaatagtctcacacttcaacaaaacattttctttgtttagtaagtttgagtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaacaaatagtctcacacttcaacaaaacattttctttgtttagtaagtttgagtctt 380

                                                                       
Query: 181 ttctgaaaagtatgaactgaaattcccacatagttaaagtgtgattgacataagaatggg 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttctgaaaagtataaactgaaattcccacatagttaaagtgtgattgacataagaatggg 440

                  
Query: 241 tgaaccc 247
            ||||||
Sbjct: 441 cgaaccc 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)