BAC Information

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BAC

Clone NameMSMg01-390B22
Chromosome16 (Build37)
Map Location 17,264,859 - 17,265,309
singlet/doubletsinglet
Overlap genenone
Upstream genePkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2
Downstream geneD16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390B22.T7 (MSMg01no390_b22.b1)MSMg01-390B22.TJ (MSMg01no390_b22.g1)
ACCAG492211AG492212
length742745
length of high quality
(start - end)		457 (82 - 538)486 (86 - 571)
definitionCHROMAT_FILE: MSMg01no390_b22.b1 PHD_FILE: MSMg01no390_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:56 2005CHROMAT_FILE: MSMg01no390_b22.g1 PHD_FILE: MSMg01no390_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:33:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTGACATCTATAATTGCGGCCGCTATACGAATACTATAGTTCGNAC
ATCCGCGGAATTCTCTNNTAATTCCCAATTTTGATCCCTCACTCTCAAGT
GCTGGTGCCTAGACCTGGCTGCTTATTTTAAACCTCCCATGGACATAGTC
TCTCCTCCTTCCCCTGACTCCCTTCTGTTCTTGAGATAGTGTCTCTCACC
ATGCAGCCTTCTCTTCCTTGAAACTTGCTGCATAGACTGGGATGACCTTT
AAAAAATTTTTTTTAAAAAAGATTTATTTATTGTTATATGTAAATACATT
GTAGCTGTCTTCAGACACTCCAGAAGAGGGCATCAGATCTCATTAAGGAT
GGTTGTAAGCCACCATGCTGTTGCTGGGATTTGAACTTAGGACCTATGGA
AGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTGATTTT
TTTTTTAAATTAAAGATTTATCTATGTATATAAGTGCTCTCTCATATACT
GCATGCCAGAAGGGGATCGAATCCTATTATTATACATGTAATTCCTGGGG
CTTTTCTAAAGTCTCTTTTGTGCCCCAGTAGTGCCAGCATTTCTATGACT
GCACTCTTGCCAGTTTTAGCTCCCCTGTAAATACCCCACAGACCTATTAG
ATTTATTAACAAGCTGCCCCCCCGTGCCTGGGAAAAACTCCCCCGGTCTA
ACCCTCCCTGGGGGGCCACTTCCCCGCCCCGCGGTCTTTTTN

TTTTTTTTTCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCGGACAACCGGA
TCCTTCTACGGCAAAGCTTTTATTGCTTCAACATAAGGAAGACCCCGAAC
CCAGAAAATGGTGCTGCTTATATAGCCAGCAGCGTGACGTTTCAGCACTT
GATGTGGTGTGACAGCACCTGATTAGTTGCTCGCCCATCACCCCATTACT
ACGCCCCGAGATGGGCAGTGACTGGGCGTGAATTTACTCTTGCACTTGTG
CATAAAGCTTGTTTACTAGTTAGGCGCAGTGGAAGCCAGCGCCATCTTAT
AATGGCGATTGCTCACAGCATGGCTCTCCACATCTCCCCCTTTTTATTTT
ATTAAAATTTGAGGCTGGTCTAGGCCTCTGCAGTCATGTCCATCTGCTGT
GGCTCCTGTCTTAGGTCATTCCTCCAATGTCACAGCCTTTCCTGTCATAG
GGTAACTCTATCGCCACTGGGTCCCGTGTCTTAGGTTGGTCTGTACATGA
GGAAAGTTGCCTGTCTCTGGATACCGCAGTACTATGTGACAGTAACTGCC
CAATGACCTAGGGCAAACTCTTATAAAGAGGCCAGCCAAAAAAACGAATT
ATTAAAACCCTCCGAAAGGCAAGTGCTGAATCATGAACGGTGAATATCTC
TCCTCCCCTCGCATGGGACCCAAAAACCTTGGGACCCATAATCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_b22.b1 MSMg01no390_b22.b1 CHROMAT_FILE:
MSMg01no390_b22.b1 PHD_FILE: MSMg01no390_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:33:56 2005
         (457 letters)



>mm_chr16_17264659_17265512
          Length = 854

 Score =  820 bits (424), Expect = 0.0
 Identities = 446/454 (98%), Gaps = 4/454 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatccctcactctcaagtgctggtgcctagacctggctgcttattttaaacctcccatg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 201 tgatccctcactctcaagtgctggtgcctagacctggctgcttattttaaat-tcccatg 259

                                                                       
Query: 61  gacatagtctctcctccttcccctgactcccttctgttcttgagatagtgtctctcacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 260 gacatagtctctcctccttcccctgactcccttctgttcttgagatagtgtctc--acca 317

                                                                       
Query: 121 tgcagccttctcttccttgaaacttgctgcatagactgggatgacctttaaaaaattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 318 tgcagccttctcttccttgaaacttgctgcatagactgggatgacctttaaaaaaatttt 377

                                                                       
Query: 181 tttaaaaaagatttatttattgttatatgtaaatacattgtagctgtcttcagacactcc 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttaaaaaagacttatttattgttatatgtaaatacattgtagctgtcttcagacactcc 437

                                                                       
Query: 241 agaagagggcatcagatctcattaaggatggttgtaagccaccatgctgttgctgggatt 300
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 438 agaagagggcatcagatctcattaaggatggttgtgagccaccatgctgttgctgggatt 497

                                                                       
Query: 301 tgaacttaggacctatggaagagcagtcagtgctcttaaccactgagccatctctccagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tgaacttaggacctatggaagagcagtcagtgctcttaaccactgagccatctctccagc 557

                                                                       
Query: 361 cctgatttttttttt-aaattaaagatttatctatgtatataagtgctctctcatatact 419
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cctgatttttttttttaaattaaagatttatctatgtatataagtgctctctcatatact 617

                                             
Query: 420 gcatgccagaaggggatcgaatcctattattata 453
           ||||||||||||||||||||||||||||||||||
Sbjct: 618 gcatgccagaaggggatcgaatcctattattata 651


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 854
Length adjustment: 10
Effective length of query: 447
Effective length of database: 844
Effective search space:   377268
Effective search space used:   377268
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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