BAC Information

Click to search

BAC

Clone NameMSMg01-390D13
Chromosome16 (Build37)
Map Location 55,077,215 - 55,214,796
singlet/doubletdoublet
Overlap geneLOC436421
Upstream geneLOC100043442, LOC100043449, LOC667927
Downstream geneZpld1, Nfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-390D13.T7 (MSMg01no390_d13.b1)MSMg01-390D13.TJ (MSMg01no390_d13.g1)
ACCAG492288AG492289
length729736
length of high quality
(start - end)		434 (143 - 576)584 (81 - 664)
definitionCHROMAT_FILE: MSMg01no390_d13.b1 PHD_FILE: MSMg01no390_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:04 2005CHROMAT_FILE: MSMg01no390_d13.g1 PHD_FILE: MSMg01no390_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:34:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,214,363 - 55,214,796)(55,077,215 - 55,077,798)
sequence
NNCCCCTCTATAATTGCGGCGCTAAACGAATACTATATTTACAACACCGC
GGAATTCCTTGGCTTTATTTCCTTTGAGAGGGGAGAGCATTGCTTTGGAA
ATAACTCCCTATGTGACACAAGCAATGGTTCGCTTTCTGCTCTTACTTTT
TGGCCATGTTTATTTTGCCTTTATACTCACCAAAATGTGAACCAACTGCA
CTCATTCACAATTCTATTATCTTCCTGAACTTGTGTACTTTCTAAAATAA
GGGTGACATTAACTCCAGATACTTACAGGAGACCACCATAAGTAATCTGT
GTATCCCCAACAAGCCAGACAGTTATATTCTACCTACTGTCCAAAACTGG
GACTAAGTCTTCATTATGAAATCAATATACTTTAGTTTGCACAGCATTTT
CATATTATTGATAACACTAACCTGTGACCTCTTGGGCACAAAGGCTGTTT
CAGTTGGATAAGGGTGTTCTCAATAATGTCTATTATTGTAAGCCACAATA
CACACTTTGGGTTAAAGGAATCAACTTTTTGGATCAAAAAGTCCACTGAT
CAAAGCACAAATACTTGGATTCCTCTGTTCTCTGCCACATGGCTTAGAGA
CACAAATTTCTGCCAACAACAGTAATTTGTAGTTGTCTAGGCTGCATAGT
TTGGCTTCTAGCAATATTTTATATGAGAGATAAAGGTAGCCAGTTTAAGA
CCTAGCCCACAGTCCATAACACCCTTATA

NNNCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCCAAACCAATGCTCCT
CGTTTCTGGACACTTTCCTCTTTCCTTTCTAGGACAGGGATTATTTTTCC
CTGCTGTCATTAAATTACGTTCCCACCTGAGGCAGCTAATTGGTTATTCA
TTTGAAGATGAATAAAGAACAGTGATCAAGGTAATCTCACTAAGGCAAAA
ACGGTTATAATCACAAGAGCAAGAGGTGATAAGAATGGGTTTGGGCAAAA
TACAGGGCGGCAGTAAACAAGGAGAAGTTGTTGCTTTACCAATTCACCTA
GAAATATACTGAGGGTGACCAGAGACCCTTGCATAGGAGGGATGTAATAT
ATAATGTAATTTCCACACCACAAGCCTTCTGAGAATTCTTAAGGCAAGAG
CCATTAGCATGCTAATTATTGCCCTTCTCATACCCAAGGAGGATCAGAAA
AAACTACATATATAACTGTATTCTCCATACAATCTATTGCAGTCAGCAGG
AATGGCTGAAACTCCAGAAAGAGAGAAAGGCAGAGTTAGGGACACATTTG
CACGGAGTCAATAATATGTCAATATAATCAGGGCCAAGAAAGAATGACAG
CATAATATGCATATGCGATAACTGGGTTTCTAATATTGCATTTGAATGGA
TAAGGGCCACTGACAGTGATCAATACTAATTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no390_d13.b1 MSMg01no390_d13.b1 CHROMAT_FILE:
MSMg01no390_d13.b1 PHD_FILE: MSMg01no390_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:04 2005
         (434 letters)



>mm_chr16_55214163_55214996
          Length = 834

 Score =  832 bits (430), Expect = 0.0
 Identities = 433/434 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttactttttggccatgtttattttgcctttatactcaccaaaatgtgaaccaactgcact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttactttttggccatgtttattttgcctttatactcaccaaaatgtgaaccaactgcact 575

                                                                       
Query: 61  cattcacaattctattatcttcctgaacttgtgtactttctaaaataagggtgacattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cattcacaattctattatcttcctgaacttgtgtactttctaaaataagggtgacattaa 515

                                                                       
Query: 121 ctccagatacttacaggagaccaccataagtaatctgtgtatccccaacaagccagacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ctccagatacttacaggagaccaccataagtaatctgtgtatccccaacaagccagacag 455

                                                                       
Query: 181 ttatattctacctactgtccaaaactgggactaagtcttcattatgaaatcaatatactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttatattctacctactgtccaaaactgggactaagtcttcattatgaaatcaatatactt 395

                                                                       
Query: 241 tagtttgcacagcattttcatattattgataacactaacctgtgacctcttgggcacaaa 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tagtttgcacagcattttcatcttattgataacactaacctgtgacctcttgggcacaaa 335

                                                                       
Query: 301 ggctgtttcagttggataagggtgttctcaataatgtctattattgtaagccacaataca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ggctgtttcagttggataagggtgttctcaataatgtctattattgtaagccacaataca 275

                                                                       
Query: 361 cactttgggttaaaggaatcaactttttggatcaaaaagtccactgatcaaagcacaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 cactttgggttaaaggaatcaactttttggatcaaaaagtccactgatcaaagcacaaat 215

                         
Query: 421 acttggattcctct 434
           ||||||||||||||
Sbjct: 214 acttggattcctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no390_d13.g1 MSMg01no390_d13.g1 CHROMAT_FILE:
MSMg01no390_d13.g1 PHD_FILE: MSMg01no390_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:04 2005
         (584 letters)



>mm_chr16_55077015_55077998
          Length = 984

 Score = 1098 bits (568), Expect = 0.0
 Identities = 580/584 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcccaaaccaatgctcctcgtttctggacactttcctctttcctttctaggacaggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcccaaaccaatgctcctcgtttctggacactttcctctttcctttctaggacaggga 260

                                                                       
Query: 61  ttatttttccctgctgtcattaaattacgttcccacctgaggcagctaattggttattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatttttccctgctgtcattaaattacgttcccacctgaggcagctaattggttattca 320

                                                                       
Query: 121 tttgaagatgaataaagaacagtgatcaaggtaatctcactaaggcaaaaacggttataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgaagatgaataaagaacagtgatcaaggtaatctcactaaggcaaaaacggttataa 380

                                                                       
Query: 181 tcacaagagcaagaggtgataagaatgggtttgggcaaaatacagggcggcagtaaacaa 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tcacaagagcaagaggtgataagaatgggtttgggcaaaatacagggcggcagtaagcaa 440

                                                                       
Query: 241 ggagaagttgttgctttaccaattcacctagaaatatactgagggtgaccagagaccctt 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagaagttggggctttaccaattcacctagaaatatactgagggtgaccagagaccctt 500

                                                                       
Query: 301 gcataggagggatgtaatatataatgtaatttccacaccacaagccttctgagaattctt 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 gcataggagggatgtaatatataatgtaatttccaaaccacaagccttctgagaattctt 560

                                                                       
Query: 361 aaggcaagagccattagcatgctaattattgcccttctcatacccaaggaggatcagaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggcaagagccattagcatgctaattattgcccttctcatacccaaggaggatcagaaa 620

                                                                       
Query: 421 aaactacatatataactgtattctccatacaatctattgcagtcagcaggaatggctgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaactacatatataactgtattctccatacaatctattgcagtcagcaggaatggctgaa 680

                                                                       
Query: 481 actccagaaagagagaaaggcagagttagggacacatttgcacggagtcaataatatgtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actccagaaagagagaaaggcagagttagggacacatttgcacggagtcaataatatgtc 740

                                                       
Query: 541 aatataatcagggccaagaaagaatgacagcataatatgcatat 584
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatataatcagggccaagaaagaatgacagcataatatgcatat 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |