NNTTATCATXXXXXXXXXXXXXXXXXXGAATACTATATTCAGAACACCGC
GGAATTCTCTTTAATTACCAAAGAAAGGGTTGGTGTTGATGCTAAGGTCC
TCTTCTCCAATTGGTTCTTGAACCATTAAGATGTTAGTGGCTAATGAGCT
GGGCCAAATAGATGGGACTTCCAGGTCCCCACAGGCAAGCTAGCAAATGC
AAGGGAGAGAGGAATTTCACCATGCTTCAGAGAGAGAAAAGGTGACCGAC
CAGCCATGTGAGGTCTCAGGTGGAGCAGCCAATGGATGTTTTCCCAGGTG
GGACATTAGAAACACAACTAATTTCTGATGGCAGTTTTGGGTTGCTGAAC
AAGAAGGTAACTGAGCAACTAAAGTTGAGGGCAGCATTTAGGGTGCTGAG
CTAAAAATATTGGGAAGGGCATGTTAGCCACAGGAGATTAGAAGCAGCCA
GCAACTGAGCCCTAAAGCTCAGTTGAAAAATAAGTTAGCGTGTGTGTGTG
TGTGCGCGTGTGCGCGTGTCGCCCCCCTTCTCCCCCCTCCCCCCCCCCCC
CCCTCCCCCCTCTCCCCCCCCCCCCCCCCCCCCCCCCTCCCTCCCCCCTC
CCCCCCCTCCCCCCTCCACTTTCCTCCCCCCTCCTCCCCCCCCCCCCTCC
CCCCCTACCCCCCCCTCCCCTCCCTACCCTACTCTACCTTCCTCAATCTA
CCCCCCCTCTCTCCCCCTCCCATTCCTTCCCGTCCTCTCGAATCCCCCTT
TCCTCCCGCCCCACTTCCCCN

NNCCGCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAGGTCTCCAGACACACA
CATCCTTAAGGCTTACTGGAAATGGCAGGATCCACTGGTGCAAACACAGA
GGCATTCCAGGTTGTCTAAAGATGAACTTCAATTCATAATTTAAAAGCAT
ATACCTCTGAGTAGAGATTGAAGATGCTAATGAGACATGAGTTGCAAAAT
ATTGGTAGAACTACATATAACAGAGAAAGCTTAGATGAGAAAGCCTATGC
TGTACAAAGGACCCTATTCATCCACAAATTATAACCCGGAAGCCTCATCT
TATTTTTCTTGTTAAACTGTTAAATGATTTTCCTCCTTCAACCTGCTTCA
TTTCTTGGGGATATGTTTGTTGAAAAATTCTCTCACTTTGTTTTCTACTT
TCCACATTTCTGTTCAGTTCTATAGGAGTTAAACAGTAAAACAAAATGGC
CACCAGACTGTAAATCCTGGCATCTACCAAGAGGAGAGAAAGAGAGAGAG
AGAGAAATAAAGAAAAAGTCATACCTTTTGAATTATGATAACCAAAGGAG
GTCTGCAATCAGCTTTACGGAAAAAAAAATGATCAAATTTTCTTGGAAGT
AGTGAGAAAAACTAAGGTGTCAGATGAAGCAGGATTGAGATTATATCCAG
TACCCCAAAGGGAGAGTCAAAGAAAAAAAGAAATAGGTCCCAATTTTG

Query= MSMg01no390_j14.g1 MSMg01no390_j14.g1 CHROMAT_FILE:
MSMg01no390_j14.g1 PHD_FILE: MSMg01no390_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:34:34 2005
         (556 letters)



>mm_chr16_66372274_66373231
          Length = 958

 Score =  853 bits (441), Expect = 0.0
 Identities = 527/559 (94%), Gaps = 11/559 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcaggtctccagacacacacatccttaaggcttactggaaatggcaggatccactggt 60
           ||||||||||  || | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 203 cttcaggtct-aaggc-cacacatcctaaaggcttactggaaatggcaggatccactggt 260

                                                                       
Query: 61  gcaaacacagaggcattccaggttgtctaaagatgaacttcaattcataatttaaaagca 120
           |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct: 261 gcaaacacagaggcattccaggttgtctaaagttgaacttcaattcatcatttaaaagca 320

                                                                       
Query: 121 tatacctctgagtagagattgaagatgctaatgagacatgagttgcaaaata--ttggta 178
           |||||||||| ||||||||||||||||||||||||||||||||||| |||||  ||||||
Sbjct: 321 tatacctctgggtagagattgaagatgctaatgagacatgagttgcgaaatattttggta 380

                                                                       
Query: 179 gaactacatataacagagaaagcttagatgagaaagcctatgctgtacaaaggaccctat 238
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 gaactacatgtaacagataaagcttagatgagaaagcctatgctgtacaaaggacccaat 440

                                                                       
Query: 239 tcatccacaaattataacccggaagcctcatcttatttttcttgttaaactgttaaatga 298
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tcatccacaaattataacctggaagcctcatcttatttttcttgttaaattgttaaatga 500

                                                                       
Query: 299 ttttcctccttcaacctgcttcatttcttggggatatgtttgttgaaaaattctctcact 358
           |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 ttttcctctttcaacctgcttcatttcttggggatatgtttgttggaaaattctctcact 560

                                                                       
Query: 359 ttgttttctactttccacatttctgttcagttctataggagttaaacagtaaaacaaaat 418
           |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 ttgttttctactatccacatttctgttcagttctataggagtttaacagtaaaacaaaat 620

                                                                       
Query: 419 ggccaccagactgtaaatcctggcatctaccaagaggagagaaagagagagagagagaaa 478
           || ||||| |||||||||||||||||||||||||||||||||||||||||||||    ||
Sbjct: 621 ggtcaccaaactgtaaatcctggcatctaccaagaggagagaaagagagagaga----aa 676

                                                                       
Query: 479 taaagaaaaagtcataccttttgaattatgataaccaaaggaggtctgcaatcagcttta 538
           ||||||||  ||||| |||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 677 taaagaaa--gtcatgcctttcaaattatgataaccaaaggaggtctgcaatcagcttta 734

                              
Query: 539 c-ggaaaaaaaaatgatca 556
           | |||||||||||||||||
Sbjct: 735 caggaaaaaaaaatgatca 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 958
Length adjustment: 10
Effective length of query: 546
Effective length of database: 948
Effective search space:   517608
Effective search space used:   517608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)