BAC Information

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BAC

Clone NameMSMg01-391C08
Chromosome16 (Build37)
Map Location 47,853,749 - 47,854,090
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC628757, LOC628776
Downstream geneEG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1, Trat1, EG667501, Retnlb, Retnla
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-391C08.T7 (MSMg01no391_c08.b1)MSMg01-391C08.TJ (MSMg01no391_c08.g1)
ACCAG492989AG492990
length755801
length of high quality
(start - end)
346 (65 - 410)148 (79 - 226)
definitionCHROMAT_FILE: MSMg01no391_c08.b1 PHD_FILE: MSMg01no391_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:16 2005CHROMAT_FILE: MSMg01no391_c08.g1 PHD_FILE: MSMg01no391_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:35:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCACAGAATCCGCGGAATTCAAG
GAGATTTTTTCCATCTGATATGCAAAGAGCAATGCCAACTCCTAATTCTC
ATATACAACTAGAAATAATTTCCTCTCATTTCCAGGGTACATCAGGTGCC
CTATAACAGAATCTGCATTCTGCATATAGCAGTATAAGTGCAAGCAGTTT
TGCTCTGTCTAGGTTAAAGATGAAACAGAGCCTTCCCTACTTCTGAGAGT
TTCTTTGCAATTTCAGTTTCTCCTTCCTTTCCACTGGGGATACTAGTTAA
CCAATCAGAGCTCATTTCTTTCATCTTCCAACTAAGCACTTAATGCTTTT
CTGTTGTGATAGGCTGCAAACAAACACATACATACACCACATATATACAC
ACACATAAACACACACTCATACATTCACACATACACGTACAACATGTATA
CACAACACCCACACACATACACATACTACAGAACTATCTTAATTTTCCAT
TGCTATGACAAAACAGCATGACCCAGACAACTTATAAAAGAATGTGATTA
ATTTGGCTTATGTTTTCAGAGACATTGAGCCCCTGATACCCCAGCAGAAG
AATGCTCGCCCGAAACTCCTATTTCTGACTCCCCCAACGCAACCCAAAAC
CCCCTCCAATTGGCGAGACTTTTAAACCCCTCACCCCCCCCCCCGACACC
CCTCTTCAAAAACGGCCCCCCCTCCTGTCTTTGGTGCCCCGGCCCTTCTC
CCCAG
CCTTCCAATGATAGGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAATCAAAACAACCCTGAGATTCTGTCTCACAACAGTCAGAATGGCTAAG
ATCAAAAATTCAGGTGACAGCAGATCGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCTTCCATTGTTGGTGGTAGTGCAGGCTCGTACAACCACTCTGG
AAATCAGTCTGGCGGCTCCTCATTACATGTTCCTAGCACCACCGGAGGAT
CCAGCAATATCTCTCCTGTCCATACATCCAGAAGATGTCCCACCAGGTAA
TAACCATACTATGTTCCACCACGCCCATACTTATTCTCATCCATACTACC
CCCCATTTTGTTTTTTCCCCTACCTTGTCCCCCCCTACCATGACCGCCCC
CTCTCCATGTCCGTAACCCTATCCCCATGTATTTCCCCTCTCACCCATAC
CCCCTACTGCTTCCCCCCATACTCTCACCCCACCTGGTCTGTTCCCTCTC
CTCCTTTTTTCTTCCGCTTCCGCCTTCCCCTTCCTCTTCTCCCTTCTTTC
CTTCACCATCCTTTTCACATCCCCCCCATTTTTTCTCTTTTTCCTTATTC
CCCCCCCCCCACCTTTTTTCTCCCTCCCCCCCTTTTCTCCCCCCCCCCTC
CCTACTCCTCCTCTTATCTTTTCCTCCTCCCTTTCCCCCCTTTTCTCCCT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no391_c08.b1 MSMg01no391_c08.b1 CHROMAT_FILE:
MSMg01no391_c08.b1 PHD_FILE: MSMg01no391_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:35:16 2005
         (346 letters)



>mm_chr16_47853549_47854294
          Length = 746

 Score =  538 bits (278), Expect = e-157
 Identities = 326/342 (95%), Gaps = 1/342 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgatatgcaaagagcaatgccaactcctaattctcatatacaactagaaataatttcct 60
           |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 201 ctgatatgcaaagagcaatgccaactcctaattctcatatacaactaggaatgatttcct 260

                                                                       
Query: 61  ctcatttccagggtacatcaggtgccctataacagaatctgcattctgcatatagcagta 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ctcatttccagggtacatcaggtgccctataacagaatctgcattttgcatatagcagta 320

                                                                       
Query: 121 taagtgcaagcagttttgctctgtctaggttaaagatgaaacagagccttccctacttct 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagtgcaagcagttttgatctgtctaggttaaagatgaaacagagccttccctacttct 380

                                                                       
Query: 181 gagagtttctttgcaatttcagtttctccttcctttccactggggatactagttaaccaa 240
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 381 gagagtttctttgcaatttcagtttctccttccttttcactggggataccagttaaccaa 440

                                                                       
Query: 241 tcagagctcatttctttcatcttccaactaagcacttaatgcttttctgttgtgataggc 300
           |||||||||| |||  ||||||||| |||||||||||||||||||||| || ||||||||
Sbjct: 441 tcagagctcacttccatcatcttccgactaagcacttaatgcttttctcttctgataggc 500

                                                     
Query: 301 tgcaaacaaacacatacatacac-cacatatatacacacaca 341
           ||||||||||||||||||||||| |||| | | |||||||||
Sbjct: 501 tgcaaacaaacacatacatacacacacacacacacacacaca 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)