BAC Information

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BAC

Clone NameMSMg01-392E07
Chromosome16 (Build37)
Map Location 71,238,884 - 71,239,201
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664930, Gbe1, D16Ertd519e, LOC100039231
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392E07.T7 (MSMg01no392_e07.b1)MSMg01-392E07.TJ (MSMg01no392_e07.g1)
ACCAG493842AG493843
length797757
length of high quality
(start - end)
320 (50 - 369)370 (75 - 444)
definitionCHROMAT_FILE: MSMg01no392_e07.b1 PHD_FILE: MSMg01no392_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:44 2005CHROMAT_FILE: MSMg01no392_e07.g1 PHD_FILE: MSMg01no392_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTTATCTTTTACCTGACTCTAACTTTTAAAAATGCATGTA
TTTTTAAAATGCCTGCATTTTAAAAGTTAAATTTCTTTGTTCTGTTGATA
TAATCATCAATAAAACTTCTTCCATATTGGGAAAAAAAACAGGGTGTTTT
GTAGTTAAAAAAAAATCTGTATTTTCCTGGGTAATAATTTTGGCAAAACT
ATTATTTATTTCTTTACATAATAAAGAATACAAATAATTAATAATAATTA
CAAAATATTATAGTAAGAGGAAGTGAATAATATTTTTGGTGTTTTGTTGT
TGTTGTTTTTAGTTTTATTCCTATTTTTCCCCTTCCCCCCCTTTCCCCCC
TCTTTTCNTTTCCTTTCCCCCCCCCCCTCTTTCCTCCCTTCCCCCCCCCC
CTCTTCCTTTCCTTCTCCCCCCTCTCCCCCTCTTTTTCCTCCCCTTTTTT
CCCTTCCCTCCTCCCCCTCCCTTCTCCCCCCCCCCTCCCCTTTTTTTTCT
TCCCCCTCCCCCCCCCCTTTTTCTCTCTCCCCCCTCCCCCCTTCCTCCCC
TTCTCCTCTCTTCTTCCCCCCCCCCCCTTTTCTTTCCCCACTCCTCTTCC
CTTTCCCTCCTCTTTTTTTCCCCTTTCTCTTCTCCCCTTTTCCCCCTTCC
CTCTCTTCCTCCTCCCTTCTCTCTTTCTTCCCCCCTTTCCTCTTCTTCCC
TTCTTCCTTCTCCTCCCCCTTCTTTCCCCTTTTCCCTCTCCCTTCTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGGTTAGAATTTTGGGCATCACTT
ATTTATACCATCATATAATCTATGAATAGTGGAAGAGTGATACTTTTCCT
TTTTCCTTTACAGTTTGTATAAACTTGATCTTCTATTGTTTTCTTATTGA
TCTAACTAGAACTCAGAGTACTACATTAAATAGACAGGGAGAGATTGGGC
ATTCTTGTCTTGTCCTCGAATTTAGTGGGGTTGCTTCTAGTTTCGCTCTA
CTTACCTTGATGTTGGGTATCGGCTTGCTGTATATTGCTTTTATTATGTT
TAGGTTTGTGCCTTTTATCCCTGATCTATACAAGACTTTTAACATGCAGG
GGTGTTGAATTTTGTCCAAGGCTTTTCAGCAACTAATGAAATGAATATAT
GATTTTTTTCAGTTTATGTTGTGGATTATCTCGATGGATCTCTGTCTCTT
GTACCATCCTGCCTTCCCCCATTGCCGTTTACCGCCTTTTTTCTTCCCCT
TCCCTTCTCCCTCTTTCCCTCCCGTGCCGTCCCCCCCCCCCCCGTTTCCC
GTTTCCGTTTTCTTTCCGCTTCCTTCCCCCTCCTTTCTTCTCCCCTTCCC
CCCCCCCTTCCCTCCCTTCTTTCCTCCTTGCTTCGCCCCTGCTCCGCTCT
TTCCCCTCTACTCCTCCTCGATCCGCCTCTTCCTCCCCTTCTCCTCCCTT
CCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_e07.b1 MSMg01no392_e07.b1 CHROMAT_FILE:
MSMg01no392_e07.b1 PHD_FILE: MSMg01no392_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:44 2005
         (320 letters)



>mm_chr16_71238680_71239401
          Length = 722

 Score =  584 bits (302), Expect = e-171
 Identities = 314/318 (98%), Gaps = 2/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttatcttttacctgactctaacttttaaaaatgcatgtatttttaaaatgcc 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttaccttttacctgactctaacttttaaaaatgcatgtatttttaaaatgcc 264

                                                                       
Query: 65  tgcattttaaaagttaaatttctttgttctgttgatataatcatcaataaaacttcttcc 124
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 tgcattttaaaagttaaatttctttgttctgttgatatagtcatcaataaaacttcttcc 324

                                                                       
Query: 125 atattgggaaaaaaaa-cagggtgttttgtagttaaaaaaaaa-tctgtattttcctggg 182
           |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 325 atattgggaaaaaaaaacagggtgttttgtagttaaaaaaaaaatctgtattttcctggg 384

                                                                       
Query: 183 taataattttggcaaaactattatttatttctttacataataaagaatacaaataattaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taataattttggcaaaactattatttatttctttacataataaagaatacaaataattaa 444

                                                                       
Query: 243 taataattacaaaatattatagtaagaggaagtgaataatatttttggtgttttgttgtt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taataattacaaaatattatagtaagaggaagtgaataatatttttggtgttttgttgtt 504

                             
Query: 303 gttgtttttagttttatt 320
           ||||||||||||||||||
Sbjct: 505 gttgtttttagttttatt 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 722
Length adjustment: 9
Effective length of query: 311
Effective length of database: 713
Effective search space:   221743
Effective search space used:   221743
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)