BAC Information

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BAC

Clone NameMSMg01-392J03
Chromosome16 (Build37)
Map Location 97,782,858 - 97,783,096
singlet/doubletsinglet
Overlap genenone
Upstream geneDscam, Bace2, Mx1, ORF9, EG668559, LOC100041436, Mx2
Downstream geneTmprss2, Ripk4, Prdm15, 5830404H04Rik, Zfp295, LOC100041502, A630089N07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392J03.T7 (MSMg01no392_j03.b1)MSMg01-392J03.TJ (MSMg01no392_j03.g1)
ACCAG494074AG494075
length768795
length of high quality
(start - end)
239 (80 - 318)72 (75 - 146)
definitionCHROMAT_FILE: MSMg01no392_j03.b1 PHD_FILE: MSMg01no392_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:08 2005CHROMAT_FILE: MSMg01no392_j03.g1 PHD_FILE: MSMg01no392_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCACACGATCCGC
GGAATTCTCACTGTGCCTTGAGTTCTTCATCGTGTTTCTTGTAGAATGTC
CCTCAGCTCCTTGTTCCTCTCCCTCCCTACTGGGAGCATCTTCTCCTTCC
TGGGTCCGGTATTCCAGATGCTTCAGTGCTTCAATGAACCTGGGCATCTG
ACTTCAGCTAGTTCTGTGACCTAAGGCTTCTTAAACACGAAGTCAGGAAG
TGCTGTGTAGATTTGGAGCCGGGTTCTGGGAGAGCCAATCTGAGGGTTAG
GCTTATCTACTCATCTCCTTTTTTATGGAGGGACTCTGCAGCTCTTCAGG
GAGAGTATGGTTCCCTAACTGACCTGGTCCTACCCTGGATGGTTTTTCTA
CTGCAGCTGTGAATGCCCCCCCCCCAACAGCTGCTCACACTGAGACTGCT
TAGTATTCCCTGCACACCATTGCCCATGTGCACAAAGCATGTGCACACAT
GCCCCGATAGTTTGCCTTTCCAAGATTGTTTTCACCTTGCTGCGGTCCCT
AGCAACTAAACCCTCCTTGGATCCCCATTCCAGGGGCTTTCACCCCTCCT
TTTCTCCTCCACATTTGACCCCCACCCCCTGCATCCCCGCCAAATTCCCC
CCCCACTCTCTTGTGCCTTATCTACCCCGCCCCCCCTCATTAACTTCCCT
CGTCTCCTCCCCCTCTCCCCCCCCCCCCTTCCTTTCTGGCCCCCTCCCCC
TCTTCCCCCCCTCCCCTN
CTTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGAGAATCTGGGTCCTCATTAGGAAAT
AAGAAGTAGAGATTTGTGGGTGATGGTTTTAGAGTCTTAAAATAATAAGG
CCAAGGGATAATTCTCTTACAGAACATGCTGGCCGCCAGTAGTGTAAGCA
GCTACAGTAGAGTTGCCCTGTAGAGTCCAGCTGAGGTCTGGGTGGAACTC
CACTATAAAGCCTCTCGCCTGCCAGCATTCTCTAAGTGCTCCAGGTGGGG
CTCACCTACTATCTGCTGCCTTTTTTTTATAGGCACTTGCGAGGCGCCAC
CTTAGTCCCCCCTGCTCCGACGTAATCGCAGACGCAGGCATGTGATCATG
CCGCTCTTACGATCCTCCCCCCCACCCCCGTTTCTACCCTGTGCCTCTTT
CCCCTTGCCTCCCTTCCACAACATTCCCCTTTCCTCTCTCTCCCCTTCCT
TCCGTATTCCCTCCTCCCGCCCTCCCTCGTTCCTTTATTTCTCCCCTTTT
GTTCCTTCCCGCCTCCCTCCCTTCCCTCTTTTTTCCTCTTCCCTCCTCTT
CTTTCTTCTCCCTTTTACTTTTTTTTTCCCCTCTTACTTCCTTCTTCTCC
CCCCTTGTTTTCTTTTGCGCCCCTCCCCCCCTTTATCCTCTTTCTTCCTC
CCCTACTTTCTTCCCTCCCCCCCCCCTTTCTATTTTCTTCTCCCTCCTTC
CCTTTCCCCCCCCCCCCCGCTCTTCTCCTCGCTTTTTTTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_j03.b1 MSMg01no392_j03.b1 CHROMAT_FILE:
MSMg01no392_j03.b1 PHD_FILE: MSMg01no392_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:08 2005
         (239 letters)



>mm_chr16_97782658_97783296
          Length = 639

 Score =  447 bits (231), Expect = e-130
 Identities = 237/239 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcgtgtttcttgtagaatgtccctcagctccttgttcctctccctccctactgggagcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcgtgtttcttgtagaatgtccctcagctccttgttcctctccctccctactgggagcat 380

                                                                       
Query: 61  cttctccttcctgggtccggtattccagatgcttcagtgcttcaatgaacctgggcatct 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 379 cttctccttcctgggtccggtattccggatgcttcagtgcttcaatgaacctgggcatct 320

                                                                       
Query: 121 gacttcagctagttctgtgacctaaggcttcttaaacacgaagtcaggaagtgctgtgta 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 319 gacttcagctagttctgtgacctaaggcttcttaaacatgaagtcaggaagtgctgtgta 260

                                                                      
Query: 181 gatttggagccgggttctgggagagccaatctgagggttaggcttatctactcatctcc 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gatttggagccgggttctgggagagccaatctgagggttaggcttatctactcatctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)