BAC Information

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BAC

Clone NameMSMg01-393A18
Chromosome16 (Build37)
Map Location 40,247,231 - 40,247,545
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667400
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393A18.T7 (MSMg01no393_a18.b1)MSMg01-393A18.TJ (MSMg01no393_a18.g1)
ACCAG494438AG494439
length781820
length of high quality
(start - end)
445 (36 - 480)363 (65 - 427)
definitionCHROMAT_FILE: MSMg01no393_a18.b1 PHD_FILE: MSMg01no393_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:48 2005CHROMAT_FILE: MSMg01no393_a18.g1 PHD_FILE: MSMg01no393_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGAT
TCCTTAGTGTTTTTTTGATTTTGTACCTATGAAAGTTCAATAATTGGTGG
TAAATTCCCACTTTTGAAAAATACATTTTTGTTATGCATGCACCATTGCA
TGCACTATCATAAAGAATAATTTGAGCAGCTTACAAAAAAATGTACCGTG
CTTTCACTTTTACATGTTTGACATACTCTCCTCAAGATGGCCAACCACTG
GCTATTTATATTTATAGGCCTCTTTCATATATCGTTTGTTCAACTCAATA
TGATATCAAATGTTATATAAATGGAACCACTCAATATTTGGTATATGTAT
ATAGTTTAGTCAGAGTGATTGTTTTTACCTAATAGTCCACACTTAAAATT
TCATGGCTATATGGTCCATTTCGTTTTTATTGTTAAATAACATCCTATTG
TTGTAGTAAAGCTTGTTTGCATATTTATTGAAGGGCATCTTGNTTAGTAC
CAGTTTTTAGAGATTATGAATAAAACTGATATAAGCTTCTCTACGGGCAT
AGTTTTCCCATTCCTTGCCTGAAAAAGGAAAACCCCCCTACTGGTTTTTT
TTGAAAAATAACCTTTTCCCCCGCGTTTTTTTACCCCTTTAAAATTTGTG
TTCCTAACCCAAATCCCCCCTTCTCCTCTAACAAAAATTGTCCCTTTTTT
TAACACCTTCCCCAACCCCCTTTAAAATTACCCTTATTTTAACCCTTTTT
AACGCTCCTTTCTCTTCCACACATATATTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGGAAACCACGGAAGGATTCCTAAACTGGGAAAGAC
AAAAATGGAGCAATGGGTGTGTGAAAGGCAAATAATAAAATAAAATAAAA
TAAAATAAAATTAAATTAAATTAAATTAAATTAAATAAAATTAAATAAAA
TTAAATAAAATTAAATAAATAAAGTAAAGCAAAACATGAGGCAGGAAAGA
GGAGTGACTGGCAGTGTGATAAAAGAAAGCAGGGGAAGAAAGTAAAGGGT
GAGTGATATATAGGAGGACTGCAACTGAACTGAACACACATGTCAATTTT
GTCTTTCTATCCTTAGTACTTTTATAATAAGTAATTTACATTATATTCAT
TTTTGTAAAACACAATATATGAAAAAGAATAAGGAGAAGATCATTAATAA
TACCACTTACTCTATCTTTTCTCCTCTCTTCTCCTCTTTCCCTTCCCTCC
TCCCCCCCCTCCCCCTCTTTCTTCTTCATCTCCCCACCCCCCCCATCCCT
CCCCTCCCCCTTCTTCCTTCCCTCCCTTCTCTCCTTTCCCCTTCCTTTCC
TCTTCCTCTCTCCTTACCCTTCTTTCTTACTTACCCATTCTTTTCCCCTT
CCCCCTCTTTCCCCTTCACTCCCTTCCACTTCCTTTTTCTTCCTCTCTTT
CTCCCTTCTTCTCCCCCTTCTTCTCTTTCCCACTTCTCTTCTTCTTCTCC
TCCCTCCCCCACTTTTCTCCTCCATTCCCCTTTTTATTACCTCTTTCTAC
CTCCTTCTCCTTTACTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_a18.g1 MSMg01no393_a18.g1 CHROMAT_FILE:
MSMg01no393_a18.g1 PHD_FILE: MSMg01no393_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:48 2005
         (363 letters)



>mm_chr16_40246983_40247745
          Length = 763

 Score =  360 bits (186), Expect = e-104
 Identities = 297/364 (81%), Gaps = 50/364 (13%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaaaccacggaaggattcctaaactgggaaagacaaaaatggagcaatgggtgtgtga 60
           ||||||||||  ||||||||| ||||||||||||| |||||| || ||||||||||||||
Sbjct: 249 aggaaaccacaaaaggattcccaaactgggaaagaaaaaaat-gaacaatgggtgtgtga 307

                                                                       
Query: 61  aaggcaaataataaaataaaataaaataaaataaaattaaattaaattaaattaaattaa 120
           | |||||||                    |||||||||||||||||||||||||||||  
Sbjct: 308 agggcaaat--------------------aataaaattaaattaaattaaattaaatt-- 345

                                                                       
Query: 121 ataaaattaaataaaattaaataaaattaaataaataaagtaaagcaaaacatgaggcag 180
                                    ||||||| ||||||| |||||||||||||||||||
Sbjct: 346 -------------------------attaaattaataaagcaaagcaaaacatgaggcag 380

                                                                       
Query: 181 gaaagaggagtgactggcagtgtgataaaagaaagcaggggaagaaagtaaagggtgagt 240
           |||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gaaagaggagtgactgaccgtgtgataaaagaaagcaggggaagaaagtgaagggtgagt 440

                                                                       
Query: 241 gatatataggaggactgcaactgaactgaacacacatgtcaattttgtctttctatcctt 300
           | ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 441 ggtatataggaggactgcaactgaactgaacacacatgtcatttttatctttctatcctt 500

                                                                       
Query: 301 agtacttttataataagtaatttacattatattcatttttgtaaa-acacaatatatgaa 359
           | |||||||||| |||||||||||||||||||||||||||||||| | | ||||||||||
Sbjct: 501 aatacttttatattaagtaatttacattatattcatttttgtaaata-agaatatatgaa 559

               
Query: 360 aaag 363
           ||||
Sbjct: 560 aaag 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)