BAC Information

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BAC

Clone NameMSMg01-393L06
Chromosome16 (Build37)
Map Location 46,007,825 - 46,008,413
singlet/doubletsinglet
Overlap genePlcxd2
Upstream geneEG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418
Downstream gene4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393L06.T7 (MSMg01no393_l06.b1)MSMg01-393L06.TJ (MSMg01no393_l06.g1)
ACCAG494935AG494936
length7791,277
length of high quality
(start - end)		594 (33 - 626)---
definitionCHROMAT_FILE: MSMg01no393_l06.b1 PHD_FILE: MSMg01no393_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:45 2005CHROMAT_FILE: MSMg01no393_l06.g1 PHD_FILE: MSMg01no393_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCCCATA
TATTCTAATTTCTCATCAAGACCAGACTGAACCTGACTGTAAGCCTTTCT
CTGGGAAGTGCTAGAAGTCAGATTGCAGTAACCATAACCAGAAATGGGGG
ATGGAAGGTTGTAAATGGATAGTTCTTGAATGTGTATTTCCAGTTCTGAC
ATGACATACCTACATATGTCTCTCTCTTTCCTGGAAAGAAGACATTTCAT
GATAAAAAATACAGCATGTATTGGGGAGATGGGAATACCATTTTCTCTTT
CTGCTTATCAGGAGAATTTTGCTTTATAAAGCAAGGTCAACGAATGTCTG
AGTGCTTCGTAGAGCTCATACTGAGTTTCAGGTATGGCAATGGGTCTCAA
GAATTTTGTTTCCTCTAGAAATCCTAGTACCTGAAATATACTATAGATCA
AAAACAAACACCCAGATCCTTTGTAAAGTCCAGCCAGAACTCACAGCCCA
GTGGAGCTGCAGTTTGAACTGTCCAAAGTACCAGGAAGGAGGGAGCACAG
CCTACCCGGACATGCCGTGGATGACAGGGTCATTTAGGGCCTGCCTTAGA
TGCCATTCTGTTTGCAAACATGAACTACCTGCCATATCACTCAGCAAAAT
AATTCCATCGGAGAGCCCGAAAGCAAATGACTCATGTTAGAAGTGTCCCT
TGCATCCCTTTGGCAGTGACTCCCCTATGCTTCAATTAAACATGGAGGGA
AAAATGTTCTTTAAAAATGGCCTTCTTGC

TGGTGTTAATTGGTAGAGGCGACAGNNGAGGCATGCAGAAGCGCGTTCGC
GGGCGTNCTGAGCCGCGATACGGCCTGCCTGGCGAGCGCGGGGTGGCGCG
CGGCACCGCGCGACAGGCGGNGTGTGGAGTGCGCGTGCAGGGCGAATCGT
AGTAGTGCGACTCGCATTCGTGGCACTACGCCGCCATATACTAATGTAGC
CCGGTGAATGGGACGAAGAATACTGATATGAGCCAAAGATGAGCGCACAT
CGCGCGCCTCTCGACGGATACTACAAGATGTGATATTTTGACAGATGTAA
CACTCAATCTTGCGCTCCTACACCGTGGGCTGAATTATATATATATCATC
TTCAAAATAGATCATACGCAGATGACCGAATTTCCTGAACTCTAGGCGAA
CTTGTTATATCGACGAAAAATAGATGACGGCGACTAGTGACAAGATTCGC
CAATAATTATACACGTAGCAAACGAATGAATGGTCCGCATGAAAACATCG
ACCGTACAAGCGCTGCAGCACATAAAGATTCGATACACATACGAGAATAC
TACTGCCTCACACCTAGCACATAAATACACGAGACATAACCGCACTTCAG
AGAACACGACAGCATGCATCATATATCCTAACACGATCACACTACGTCGA
TTGGTATACATCACTCCATACGATTCGACGCGTTATGAATCCGCGCCACG
ATTATGATGTCGACGTACTGCAAGCCACACATCCTCAATTCCGATTCATC
ACCGCTACATCTCGTATGGCTCACTATTACAGCCGCGTATGGCACGACAC
ACTGGACGATGTGCGTGCGAGTTTGTGCAGAGACGCTCAACACATATGTT
AATGCTATAGCCTCATACTCTTCTGCGTGGCAGGTCACCGCGCATAAAAG
CGAGACTGACATATCACCTCTATGTTCATAATNCTCTCCTCAATCTACGG
AACTCCGAGATCGACAAATGACCAACCTCGCTAGATATAGATTGCGAACC
CTCCATTCCTACATCTCTTCCGGAATCCGATCCACTCGTCGTGTGGTAGC
GCTTCGCCGTGTATAGTGTCGTTTCCGTCTAGTCCGAATATATCTGACAC
AGACCGATGAGCTAGTTGTCTAGCCAGTAGGATTGTATATCTGTCTCTCT
TGATTCTGCGCATGATATATTATATCTACGCTCCTGTGTCTCGGTCGCGT
GTATCTCCGTACCGTTCTGATCCGTAAATCAAACATTAATGTTAGANACG
TCAATAATATTTTATGAATGTCAAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_l06.b1 MSMg01no393_l06.b1 CHROMAT_FILE:
MSMg01no393_l06.b1 PHD_FILE: MSMg01no393_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:45 2005
         (594 letters)



>mm_chr16_46007621_46008613
          Length = 993

 Score = 1087 bits (562), Expect = 0.0
 Identities = 583/590 (98%), Gaps = 1/590 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcccatatattctaatttctcatcaagaccagactgaacctgactgtaagcct 64
           |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 205 gaattcatcccatacattctaatttctcatcaaggccagactgaacctgactgtaagcct 264

                                                                       
Query: 65  ttctctgggaagtgctagaagtcagattgcagtaaccataaccagaaatgggggatggaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctctgggaagtgctagaagtcagattgcagtaaccataaccagaaatgggggatggaa 324

                                                                       
Query: 125 ggttgtaaatggatagttcttgaatgtgtatttccagttctgacatgacatacctacata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggttgtaaatggatagttcttgaatgtgtatttccagttctgacatgacatacctacata 384

                                                                       
Query: 185 tgtctctctctttcctggaaagaagacatttcatgataaaaaatacagcatgtattgggg 244
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 tgtctctctctttcctggaaagaagacatttcatgataaaaa-tacagcatgtattgggg 443

                                                                       
Query: 245 agatgggaataccattttctctttctgcttatcaggagaattttgctttataaagcaagg 304
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agatgggactaccattttctctttctgcttatcaggagaattttgctttataaagcaagg 503

                                                                       
Query: 305 tcaacgaatgtctgagtgcttcgtagagctcatactgagtttcaggtatggcaatgggtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcaacgaatgtctgagtgcttcgtagagctcatactgagtttcaggtatggcaatgggtc 563

                                                                       
Query: 365 tcaagaattttgtttcctctagaaatcctagtacctgaaatatactatagatcaaaaaca 424
           |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 564 tcaagaattttgtttcatctagaaatcctagtgcctgaaatatactatagatcaaaaaca 623

                                                                       
Query: 425 aacacccagatcctttgtaaagtccagccagaactcacagcccagtggagctgcagtttg 484
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aacacccagatcctttgtagagtccagccagaactcacagcccagtggagctgcagtttg 683

                                                                       
Query: 485 aactgtccaaagtaccaggaaggagggagcacagcctacccggacatgccgtggatgaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aactgtccaaagtaccaggaaggagggagcacagcctacccggacatgccgtggatgaca 743

                                                             
Query: 545 gggtcatttagggcctgccttagatgccattctgtttgcaaacatgaact 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gggtcatttagggcctgccttagatgccattctgtttgcaaacatgaact 793


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 993
Length adjustment: 10
Effective length of query: 584
Effective length of database: 983
Effective search space:   574072
Effective search space used:   574072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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