BAC Information

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BAC

Clone NameMSMg01-394F01
Chromosome16 (Build37)
Map Location 35,719,851 - 35,720,152
singlet/doubletsinglet
Overlap geneDirc2
Upstream geneMylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663
Downstream geneHspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394F01.T7 (MSMg01no394_f01.b1)MSMg01-394F01.TJ (MSMg01no394_f01.g1)
ACCAG495400AG495401
length800741
length of high quality
(start - end)
146 (58 - 203)427 (86 - 512)
definitionCHROMAT_FILE: MSMg01no394_f01.b1 PHD_FILE: MSMg01no394_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:39 2005CHROMAT_FILE: MSMg01no394_f01.g1 PHD_FILE: MSMg01no394_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:39 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTCCTTCTTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCACTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTAGACATATATATGACAAGGACTAGGAAGATGGCTCAGTGAGTAAGAC
TGCTTACAAGACTGACAACCTGAGTTCAGTCCCCAGAATCCATATTAAAA
TGCTAGCGGCTGCGAGGTGTATCTTTAATCCCTGGACTCTGACTGCAAGA
GGGCGGGTAGAGGAAGGAAAACCACCTGGAAGTGCATGGGCCAGCTAGCT
TGGAGTATGCTATGCTGTGTTATACACTGAGTATCAGCTCCTGAAAATTG
CCCTCTGACCTCTGCGTACATGCAAGAGCATATCACTGCTTACACTCACA
TACATACTTACTCATGGTAAAGCAAAATATACAAGCGGCCTGGTATTATC
GTGTTCTTTACTCTTCACATGAGGTAATGTCTAATCACGGTGTATCTTCT
GACCTCTACGTGTACCTCTGCCTCCCCTTTTCACTTCACCTCCGATTACA
TGACCACACCCTTGTCTATTATGTTCCCCCTTCCTATCTTCTCATATCTC
CCGCAATACTATACTGCCTTCCCCTTTCCCGCTATTTTGCCATCCCTCCC
CCCTCCCCCTACCATCTGGCCCTTATTTCTTACATCTCTCTCCCTTCACC
TCACCTATTCTCTTCGTCTCAACTATATATTCCGGTATTACCCTTTTATC
CTTCTCGCCCATTCCTTCCTTCCTTCCCCATTTATTCCCTCTCTCTCCCC

TTTTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTACCCTTCTACGT
TGGCTTCCTGGGTGCTAATATGTTGCCACAGCTTTACTGTATTCTTGCTC
CTAGAAAGTTTACAGTTTGCATGAAATAAATAATTTCCAACCGAGAAAAG
TTCTTGTGGGGATCTAAAGCAGACTGCAGGGGAGGACTTGAGGGAGCATG
AAGGGCCATGTTGAACAACTCCTGGGTGAGTGGAGCAGGAGTGGGGCCAC
ACAAGGACCTGAGGTGTTAGTGTTTCCAGCAGAAAGGCCGCTACAGGGAA
GTCCCCAAGTCAAACCCTGCTGTGGGAACCAGCCTTCACATGGAAGAGAA
GAGAGCACAGCTACCCAACGGGAAAAGGGGGCAGGAGGTAGAGCAGGGCC
AGGGCCAGCTGGAGGAGGGATGCTCAGAGGCGCTTGTGTGTATGACAGGG
CGGTGAGTTTTGGAAGAGCCAGATTTGCACTTTAGTGTCAACCCTACAAC
AGAGTGAATCTCTATTCATTACAAGATGTTGAACTAACCTACCCGATAGC
TTATAAGTTCAATTAACATAGCTAATCTGAGGATCCTGAAGATACCAAAC
AAGCTAAATTGAAGCAACGATTACAAATGGTTTTTCCCTATCTAATTCAC
AAAATAATTTACATTGATAACAGAAAGTATAAAACTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_f01.g1 MSMg01no394_f01.g1 CHROMAT_FILE:
MSMg01no394_f01.g1 PHD_FILE: MSMg01no394_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:39 2005
         (427 letters)



>mm_chr16_35719527_35720353
          Length = 827

 Score =  540 bits (279), Expect = e-158
 Identities = 297/303 (98%), Gaps = 2/303 (0%)
 Strand = Plus / Minus

                                                                       
Query: 125 ggatctaaagcagactgcaggggaggacttgagggagcatgaagggccatgttgaacaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ggatctaaagcagactgcaggggaggacttgagggagcatgaagggccatgttgaacaac 567

                                                                       
Query: 185 tcctgggtgagtggagcaggagtggggccacacaaggacctgaggtgttagtgtttccag 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 566 tcctgggtgagtggagcaggagtggggccacacaagggcctgaggtgttagtgtttccag 507

                                                                       
Query: 245 cagaaaggccgctacagggaagtccccaagtcaaaccctgctgtgggaaccagccttcac 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 506 cagaaaggccgctacagggaagtccccaattcaaaccctgctgtgggaaccagccttcac 447

                                                                       
Query: 305 atggaagagaagagagcacagctacccaacgggaaaagggggcaggaggtagagcagggc 364
           |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 446 atggaagagaagagagcacagctacccaactggaaaagggggcaggagggagagcagggc 387

                                                                       
Query: 365 cagggccagctggaggagggatgctcagaggcgcttgtgtgtatgacagggcg-gtgagt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 386 cagggccagctggaggagggatgctcagaggcgcttgtgtgtatgacaggg-gtgtgagt 328

              
Query: 424 ttt 426
           |||
Sbjct: 327 ttt 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)