BAC Information

Click to search

BAC

Clone NameMSMg01-394F08
Chromosome16 (Build37)
Map Location 36,420,654 - 36,420,989
singlet/doubletsinglet
Overlap genenone
Upstream genePdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2
Downstream geneStfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394F08.T7 (MSMg01no394_f08.b1)MSMg01-394F08.TJ (MSMg01no394_f08.g1)
ACCAG495414AG495415
length765764
length of high quality
(start - end)
408 (54 - 461)333 (85 - 417)
definitionCHROMAT_FILE: MSMg01no394_f08.b1 PHD_FILE: MSMg01no394_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:41 2005CHROMAT_FILE: MSMg01no394_f08.g1 PHD_FILE: MSMg01no394_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:41 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CCCCCTTCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACTCTGTCCAAAAGGCTGGCCTTAAACTCAGTGATCC
ACCTGCCTCTGCCTCCTGAGTGCTGGGATTGAAGACCTGTGCCACCACTG
CTTTTTTAACAATTTAGATTGATAAATCTATTTTCAGAATTCTTTACTGC
TCTACTTAAGTTTATCATTTCCCCTCCCCTAAAAACTGCTTTAACTGCAT
CTAAAAGATATATTGCACAGCATTTCCCTTATCACTCACTTCAAAATATT
TTCTAAAGCTCCTTGTGATTTCTTGTATTAACCATGGGATTTTTATAATT
TTTATATTTTGTGTCATGTAAACATTTAGAGATTTCAGACTGTTGTGTTT
AGTTTTCCAAGGCCTAGCTTAACTATGCTGTGACCACATACACAATTTGC
GTGCATTCCAGCCTTTGGCTTTGTTCTGACTTCCTTGCGGTTCAATATAT
GATCCACAAGTTTTTCTGTATTCCTTTATAGACTTTGCAAGGAACATGTA
CCTTACCCCCCTCGGTAAAGTGCGCCCTCCCCGTGGCCCCCACGGCACCG
CTTGAGCCCTTATACTATTTCTTTTTGTCCCTGTGCCTTCATTATTACTG
GGCCCCCTTATCGCTCATCTTTTCCCATCTTAAATAACCTTCCTTTTTTC
TCATGCGTCTTCTATCTTTTTTCCTCTCCCTCTCTTATCCTCTTTTTCCT
CTTCTTCTTATTCTT
TTCCTCCTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTCAGGCTCTGGG
GAAGGTAAGGCTGCAGTAAAGAGTATGGCTTGGCCGACTTTCTCTTGGGA
TGTTAAAAGCACTCTGGCTTAATATTCCACATTTAGCTGTACCAAAGTTT
GAACAAAACCCATATATTTCTGGTTTCTGTGATATCCCACACTCTTACTG
CAATGTCAAAATGTGAATCAAATTCTGAAGGTTTGATTTGGGATCAACCT
TTTTCCTGAAATACATGGACTCACCATGTCAGCAATCTTCTGGATTTCTG
ATGTGGCAGGTCTGGCCTCTGACAAGTCTCCCTTTATTTTTCTGGTGTAT
TCAGTCATTGCTGGGCAGGTTGCCGACAAGAAATGATCCATCATGCACAG
AGACTCAGGGCTTTAAAGGTATCTGTAAACTCCTCCTCCATAATGTATCT
CCAGTGTATCTAAGGTACTGGTGAACCGAGCGTGACTTTAGACAAGCCCC
TACTGCATCCCTGAGCGCAAATGCTCGATTACAGTTTCCCGTCAATGATC
TGTCTATAAGCCCATCTTTTGTTTCATCCCTGTACTTTATTCCGTCTCCT
ATTCTTGTTATCTTTTTCTTCTCCCCCCCCCCATAATTTTTGTTAACTTA
TTCCTTCATCCCCTTATATCTTTCCACTATTTTCTCCTCTTATCCCTCTT
CGCTATTTTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_f08.g1 MSMg01no394_f08.g1 CHROMAT_FILE:
MSMg01no394_f08.g1 PHD_FILE: MSMg01no394_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:41 2005
         (333 letters)



>mm_chr16_36420451_36421189
          Length = 739

 Score =  265 bits (137), Expect = 3e-75
 Identities = 287/341 (84%), Gaps = 16/341 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ttcaggct-ctggggaaggtaaggctgcagtaaagagtatggcttggccgacttt-ctct 61
           |||||| | |||||||| || ||||||||||||||| | |||||||   || ||| ||||
Sbjct: 204 ttcagg-tactggggaaagtgaggctgcagtaaagactgtggcttgtttgattttactct 262

                                                                       
Query: 62  tgggatgttaaaagcactct----ggcttaatattccaca-tttagctg---taccaaag 113
           |||| ||||||||  |||||    |||||||| ||  | | ||||||||   ||  ||||
Sbjct: 263 tggggtgttaaaattactctgaaaggcttaatgttgta-attttagctgttata--aaag 319

                                                                       
Query: 114 tttgaacaaaacccatatatttctggtttctgtgata-tcccacactcttactgcaatgt 172
           | |||||| |||||| ||||||||  ||||||  ||| | |||||||||| | ||| |||
Sbjct: 320 tctgaacagaacccacatatttcttttttctgaaatact-ccacactcttgcagcagtgt 378

                                                                       
Query: 173 caaaatgtgaatcaaattctgaaggtttgatttgggatcaacctttttcctgaaatacat 232
           || ||| || |||||||| ||||||||||||||| |||||| ||||||| |||| |||||
Sbjct: 379 cagaatatgcatcaaattatgaaggtttgatttgagatcaagctttttcttgaagtacat 438

                                                                       
Query: 233 ggactcaccatgtcagcaatcttctggatttctgatgtggcaggtctggcctctgacaag 292
            || | ||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 439 cgatttaccttgtcagcaatctcctggatttctgatgtggcaggtctggcctctgacaag 498

                                                    
Query: 293 tctccctttatttttctggtgtattcagtcattgctgggca 333
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cctccctttatttttctggtgtattcagtcattgctgggca 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 739
Length adjustment: 9
Effective length of query: 324
Effective length of database: 730
Effective search space:   236520
Effective search space used:   236520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)