BAC Information

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BAC

Clone NameMSMg01-398C10
Chromosome16 (Build37)
Map Location 83,313,362 - 83,313,872
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665260
Downstream geneEG545172, LOC100039572, EG621729, LOC640489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398C10.T7 (MSMg01no398_c10.b1)MSMg01-398C10.TJ (MSMg01no398_c10.g1)
ACCAG498322AG498323
length771772
length of high quality
(start - end)
528 (44 - 571)512 (74 - 585)
definitionCHROMAT_FILE: MSMg01no398_c10.b1 PHD_FILE: MSMg01no398_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:48 2005CHROMAT_FILE: MSMg01no398_c10.g1 PHD_FILE: MSMg01no398_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCCTTACCATACCGAACGGCTGAGAAACACCTGAAAAAATGTTC
AACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGATTCC
ATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACACCAGA
TGCTGGCGAGGATGTGGAGAAAGGGGAGCAATCCTCCATTGTTGGTGGGA
TTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCCCAGAA
AATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGTCCCAATCGGTAAGAAGGACACATTCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAAAAAATGTGGTACATTTACACAATGGGG
TACTACTCAGCTATAAAAAGAATGAATTCACGAAATTCCTAGGCAAATGG
TTGAACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAA
CTCAAATGAAATGTACACACTGATAAGTGGATATTAACCCCGATACTTAG
TATAGCGAGATACATTATGTAAAACATATTGAACTGAGAAAAAAAAAGAC
CCCAGTGGGGACACTTGGTTCCTTCTAAAAATCGGAAACAATACCCCCGG
GAAGAGTCTCACAAACAAATG
CGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGATGATCTCCTGAAATAATATAGA
ACCCTAACATTATTGTGTTTATGTTCCTAAATTTTCAAGAAACCAATATT
TTAATATTCATTACCTATAAATTAAAAATAATTGAACATTTTTTCAAATA
CATAAGTAGATGATGATATATATGCTTTGAATTTGGGACTAACCTTGCCT
GATGTCAAACAAAGGTAAACTTAACTAGACCTACTTCCTTACATACAAAC
TGATAGGTTAATATTTATTTTCTTCCCAAGGGTATATGCCTCAAAATCTA
TTCAGAAATTATGTTTGACTTTGATGATCACAAACTTCTGCATTTACCAT
TAATGTATCCTCCAGTTTTCAATTTTATATTGCCAGATCCCTGAGTAACT
ATTTGCTTAAACATACTCATGAAAATTTTATCATAGCTTAGTTGATATTT
TAACAGTACAAATATTTCATTTACCTATTATGTTTACTGAAACATTAAAA
TTCAGTAAAATATTTACTGAAAATTTAAAAATGCTAAAAAGTGGCTTATG
TTATGATTCCATTCCCCTGCAATGATTTCTTTAATATGCGTGCCAGGATA
AATTAATATACATCTAACTTGAATTCTCCCTATTCTGGGCCATAAATTTA
TATGGGAAAAAATTACTTGGCCAAAAGGGTTTTTTCTTTTCTAATTACAG
TATTTAGGGAAAATATCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_c10.g1 MSMg01no398_c10.g1 CHROMAT_FILE:
MSMg01no398_c10.g1 PHD_FILE: MSMg01no398_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:48 2005
         (512 letters)



>mm_chr16_83313162_83314072
          Length = 911

 Score =  915 bits (473), Expect = 0.0
 Identities = 503/513 (98%), Gaps = 3/513 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgatgatctcctgaaataatatagaaccctaacattattgtgtttatgttcctaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tttgatgatctcctgaaataatatagaaccctaacattattgtgtttatgttcctaaatt 652

                                                                       
Query: 61  ttcaagaaaccaatattttaatattcattacctataaattaaaaataattgaacattttt 120
           | |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tccaagaaactaata-tttaatattcattacctataaattaaaaataattgaacattttt 593

                                                                       
Query: 121 tcaaatacataagtagatgatgatatatatgctttgaatttgggactaaccttgcctgat 180
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tcaaatacataagtagatgttgatatatatgctttgaatttgggactaaccttgcctgat 533

                                                                       
Query: 181 gtcaaacaaaggtaaacttaactagacctacttccttacatacaaactgataggttaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gtcaaacaaaggtaaacttaactagacctacttccttacatacaaactgataggttaata 473

                                                                       
Query: 241 tttattttcttcccaagggtatatgcctcaaaatctattcagaaattatgtttgacttt- 299
           |||| |  |||||||||||||||||| |||||||||||||||||||||||||||||||| 
Sbjct: 472 tttagtaacttcccaagggtatatgcttcaaaatctattcagaaattatgtttgacttta 413

                                                                       
Query: 300 gatgatcacaaacttctgcatttaccattaatgtatcctccagttttcaattttatattg 359
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 g-tgatcacaaacttctgcatttaccattaatgtatcctccagttttcaattttatattg 354

                                                                       
Query: 360 ccagatccctgagtaactatttgcttaaacatactcatgaaaattttatcatagcttagt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ccagatccctgagtaactatttgcttaaacatactcatgaaaattttatcatagcttagt 294

                                                                       
Query: 420 tgatattttaacagtacaaatatttcatttacctattatgtttactgaaacattaaaatt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tgatattttaacagtacaaatatttcatttacctattatgtttactgaaacattaaaatt 234

                                            
Query: 480 cagtaaaatatttactgaaaatttaaaaatgct 512
           |||||||||||||||||||||||||||||||||
Sbjct: 233 cagtaaaatatttactgaaaatttaaaaatgct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 911
Length adjustment: 10
Effective length of query: 502
Effective length of database: 901
Effective search space:   452302
Effective search space used:   452302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)