BAC Information

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BAC

Clone NameMSMg01-398J12
Chromosome16 (Build37)
Map Location 39,986,161 - 39,986,399
singlet/doubletsinglet
Overlap genenone
Upstream geneIgsf11, LOC667400
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398J12.T7 (MSMg01no398_j12.b1)MSMg01-398J12.TJ (MSMg01no398_j12.g1)
ACCAG498659AG498660
length874788
length of high quality
(start - end)
45 (67 - 111)242 (70 - 311)
definitionCHROMAT_FILE: MSMg01no398_j12.b1 PHD_FILE: MSMg01no398_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:22 2005CHROMAT_FILE: MSMg01no398_j12.g1 PHD_FILE: MSMg01no398_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCAAGAGGACCGNGGAANTC
ACTCATTTTCTTGTAGCACTATACATTAATTTAGAGTGTGCTTTGTTCTA
TTACGTGGGTTTCAAATTACTTCCAAGCCACAGAAATACTGTTTGGGGGG
GGGTTGTAATTGATAAAGTAACTTCTTTATTCCTTTTTTTTTCGCTACTC
TGGCTGGCATTATTCGTTTTCTTATCTCCTTGTTTTCCTTCCCATGATTT
TTTCCTTTGTTTTCATCACCTAACTGACCTCGCCTCTTCTATTTTATTAT
CCTCGCCCCCCTTGCTTTTTTTTTCTCGCACGCGCAACGCTCCTCCTCTA
TTCCCCTTCCCCTCTTTCCTCCTTCGCCCTTCCTCTTCTCTTACTGTCCT
CCCAGTTTTTTGTGTTTGCACAGCCCCCCCCTTTTTTTTTTCCGTCTCGT
TCCTCCTCCCTTTTTTCCCCGTCACTTCACACCTTATCCCCTCTCTTCCT
CTACCCCTCCCTCCTCCCTATTTATCCTCTCCATTCTTCTCTATTCATCT
TTCCATTCTCCTTCCTTTATCATTTATTTTTCTTTCTTCGCTTTTATCTC
TCTCCTCTATACTCTTATCCTTATCCCTTTCCCCGCCTTTCTCCTTTCTC
ACTCCTCTCCCCTCCTTTTCCCCCCCCCTTCTCCCCTTCCCCTGCCCCTA
TCCTTTTTCTGATCTTCCTCTTCCCCTTTATCCTTCCCCTCTTTACACCC
CGTTTATCTTATATAACCCACTTTATTTATTTTATCCCTTCTCTTTCTAT
TCCGCTTATTCTTCCTTCTACCCTTCTCATCCACGCACATTTTATATCTC
CCTTTATCCCCCTCCCCTCCCCCC
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATCTCACTATGAAATGACCAGACTGGCAATCTT
CCCTTGATTTTCTTCTGACAGCTGGTTGCTAATGTTACTTTTGTGGGTTT
CGTTTTTCATTGCTAGGGAATATTTTGGGTAGCTAGAGAGCCTTCTTGCC
AAAAGAAATGAGAATAGACTCCTCCTGGCTGTTTACTAGTTGATTTATTG
CAAGTAAATAAACACAATGTCAAAGTTCTCTTTTGAAATACACAGAGCGA
CAGCTGGATCTACTCATGTTACAATTAGAAGATACAGCTTCTAAAAAACT
TCATCTCGGAACTCATTGACCCCTTTTCTTTCTTATCAGAATTGTTAGGT
CCTGCGACCCCCCCCTTTTGTGACTGAACATGCCTGCATGAAAAATAATA
TCCAAATCTATCTTGAGAACCTGATTGCTCTCTATTTTCCTCATTTTTTT
AATTTCCTTTCCTTTCCGTCTCAATGCTGCCATGGATTCCCCTGTGATTC
TTGATGCCCTATTTTCCCCTTTCATTTATCTCGCCTTTTGCCTCTTTACT
TCCATCTATCGCATTTTCTATTCTCTCCCCCCCTCACCCATCCCTTTTTT
TTTTTTCTATCCCACTCTACTACTCCTCTTTTCCTTCACACCACCCTCTT
TTCCTTCCTTTCCAGCTCCNTTTCTCTATCCTCGTCTTTCCTTTCTCTCT
CCATTAACGCTCTCTTTTTTCCTTCTTTTGATACCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_j12.g1 MSMg01no398_j12.g1 CHROMAT_FILE:
MSMg01no398_j12.g1 PHD_FILE: MSMg01no398_j12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:22 2005
         (242 letters)



>mm_chr16_39985961_39986602
          Length = 642

 Score =  439 bits (227), Expect = e-128
 Identities = 236/239 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcactatgaaatgaccagactggcaatcttcccttgattttcttctgacagctggttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcactatgaaatgaccagactggcaatcttcccttgattttcttctgacagctggttgc 260

                                                                       
Query: 61  taatgttacttttgtgggtttcgtttttcattgctagggaatattttgggtagctagaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatgttacttttgtgggtttcgtttttcattgctagggaatattttgggtagctagaga 320

                                                                       
Query: 121 gccttcttgccaaaagaaatgagaatagactcctcctggctgtttactagttgatttatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 321 gccttcttgccaaaagaaatgagaatagactcctcctggctgtttactagttgaagcatt 380

                                                                      
Query: 181 gcaagtaaataaacacaatgtcaaagttctcttttgaaatacacagagcgacagctgga 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaagtaaataaacacaatgtcaaagttctcttttgaaatacacagagcgacagctgga 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)