BAC Information

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BAC

Clone NameMSMg01-400B07
Chromosome16 (Build37)
Map Location 56,185,852 - 56,186,282
singlet/doubletsinglet
Overlap geneSenp7
Upstream geneZpld1, Nfkbiz, Gm1752, Lrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1
Downstream geneImpg2, LOC672835, Abi3bp, Tfg, Gpr128, Tmem45a, LOC668026, LOC668036, 2310005G13Rik, Tomm70a, Nit2, Tbc1d23
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400B07.T7 (MSMg01no400_b07.b1)MSMg01-400B07.TJ (MSMg01no400_b07.g1)
ACCAG499788AG499789
length795807
length of high quality
(start - end)		541 (46 - 586)431 (72 - 502)
definitionCHROMAT_FILE: MSMg01no400_b07.b1 PHD_FILE: MSMg01no400_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:15 2005CHROMAT_FILE: MSMg01no400_b07.g1 PHD_FILE: MSMg01no400_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGATGCATACCGAATGGCAGAGAAGCACTTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCTCAAAG
AAACTCACCCCATATGGATTCACTGATAAGTGGATATTATCCCCAAACCT
AGGATACCCCAGAAATAAAAAATAATTTGCTAACACCTGAAACTCCAGAA
AAATGAAGACTGGAGTGTGGAACCTATGCCCCTCCCTTAATTTGGGAACA
AAAACCCCTCGGAAGGAGTTCTAACACCCAATTTGGGCCTATAAA

ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTAATTTAATATCTGTGCTAGAAAGAAA
CACAATTAAAATTAAAAGCCATGTGTTGGCTTACTTCATAATATAAATAA
CTTTGTTTCCTGAACTGTGAACATGATGTTGTTGAGAACTCTACTTTTTA
TTTGAAAATCACTTTCTTCACAGTGGCATTTATGAAGGCTCATGAATTAT
GGTTGTATTGTGAAAAATCTGTCTTTGGAAATTGAATTTAAAGCAGTAGA
TACTGTAAAGGAGATTTTTCTTCCTTTGTAGAAAGTGTTGCTGACTGATG
AAGTTTTCTGCTCAAGCCATTTTCCTCATTGATTATTTCAGGTATTTGGA
GGTAGAGTGGGAGGTGAAACGAAAAACACACCGTGAATTCAGTAAAACCA
ATATGGTCGACCTGTGCCCCAAAGTCCCTAAGCAGGATAACAGCAGTGAC
TGTGGAGTCTATTTGTTGCAGTATGTGGAGAGCTTTTTCCAGGTGTGTGC
TGACACAGAGTTTTCATTCCCGGTTACTGATGTGGAAGTTGCAGACCTCC
GCCAAACAGACAGGCTGGGAAATGTATATATAGCTCCGACATGGCTAGAA
GTTGTATAAACATCTCGCTCCCCCGGGCCCCATAAAAGGGGAATCCTGGT
AAGGTTAAAATATTTTTATATTTTGTTAATCCCCAAAATCCCCTCATTTA
CATAAAAGGGGTTAAATCTTTAATCTCTAAAACTTACTATTAATTTTATT
CTTTTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_b07.g1 MSMg01no400_b07.g1 CHROMAT_FILE:
MSMg01no400_b07.g1 PHD_FILE: MSMg01no400_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:16 2005
         (431 letters)



>mm_chr16_56185652_56186482
          Length = 831

 Score =  787 bits (407), Expect = 0.0
 Identities = 425/431 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaatttaatatctgtgctagaaagaaacacaattaaaattaaaagccatgtgttggct 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaatttaatatccgtgctagaaagaaacacaattaaaattaaaagccatgtgttggct 260

                                                                       
Query: 61  tacttcataatataaataactttgtttcctgaactgtgaacatgatgttgttgagaactc 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacttcataatataaataacgttgtttcctgaactgtgaacatgatgttgttgagaactc 320

                                                                       
Query: 121 tactttttatttgaaaatcactttcttcacagtggcatttatgaaggctcatgaattatg 180
           ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 taccttttatttgaaaatcactttcttcacagtggcatttatgaaggctcataaattatg 380

                                                                       
Query: 181 gttgtattgtgaaaaatctgtctttggaaattgaatttaaagcagtagatactgtaaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgtattgtgaaaaatctgtctttggaaattgaatttaaagcagtagatactgtaaagg 440

                                                                       
Query: 241 agatttttcttcctttgtagaaagtgttgctgactgatgaagttttctgctcaagccatt 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 agatttttcttcctttgtagaaagtgttgctgactgatgaaggtttctgctcaagccatt 500

                                                                       
Query: 301 ttcctcattgattatttcaggtatttggaggtagagtgggaggtgaaacgaaaaacacac 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 ttcctcattgattatttcaggtatttggaggtagagtgggaggtgaaacgaaaaacgcac 560

                                                                       
Query: 361 cgtgaattcagtaaaaccaatatggtcgacctgtgccccaaagtccctaagcaggataac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cgtgaattcagtaaaaccaatatggtcgacctgtgccccaaagtccctaagcaggataac 620

                      
Query: 421 agcagtgactg 431
           |||||||||||
Sbjct: 621 agcagtgactg 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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