BAC Information

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BAC

Clone NameMSMg01-401K22
Chromosome16 (Build37)
Map Location 55,847,051 - 55,847,374
singlet/doubletsinglet
Overlap geneGm1752
Upstream geneLOC667927, LOC436421, Zpld1, Nfkbiz
Downstream geneLrriq2, EG667966, LOC629242, Rpl24, Zbtb11, Pcnp, Rg9mtd1, Senp7, Impg2, LOC672835, Abi3bp, Tfg, Gpr128, Tmem45a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401K22.T7 (MSMg01no401_k22.b1)MSMg01-401K22.TJ (MSMg01no401_k22.g1)
ACCAG501008AG501009
length780814
length of high quality
(start - end)
459 (47 - 505)179 (79 - 257)
definitionCHROMAT_FILE: MSMg01no401_k22.b1 PHD_FILE: MSMg01no401_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:22 2005CHROMAT_FILE: MSMg01no401_k22.g1 PHD_FILE: MSMg01no401_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGCATGCGCGG
AATTCACTCTGTATTCCAGGCTGGCCTCATGATCCTAGTGATACATCTGT
CTCTGCCTTACTGGTGCAAGGCTCGGGCTACGTGCCATCACCCCCCCCCC
CACACACACACATTTAACTTTGTTATTTCTTATGTTAGACAAGTTTTCTT
ATAAGGTTTTCACTATGGGGTAAACTTAATAGTCATAAGAAACAGAACCA
CCTTTTTTTTTTTCTTATTGGAAAAACAAGGAATTTGCTTTCTTTTGTTT
TTTAATTCAGGAGTATAATTTAGATTATTTTACTTTCTAAAAAAATTATT
TGTTTACCTATTTTGAGGTGAGATCTCTCTCTGTAGCCCTGGGAAGCTTT
AAACTCAGTAATTCCCCTGCCTTAGCCTCCTAAGTGCTGGTATTACAAAC
ATATGCTATCATTCTTGGGTTAAAAATTTGTTTTAATTGATAAATAAGTG
CATGTATTTAGAGGGTACCTTGGGACCTGTGGATAGAATGATTTATTAAG
CTAACTACATACCCGTAACTTCATATACTTATTTATTGGGAGCGACAACG
GTTTGGGATGCCTTTGGGAATAGCTTGAATAATGTTTTTATTTAACATGG
GCACCCTGCTGGGGCCTCAGGTGGAATTCAGGGGGGCTGGTCCTCAACCT
GGGGCCTCCTCTTTTAAAAAAGGATCCTTTGATGGATCTCCCCGTTGGGT
TCCCACATCCCAACCCTTGGGTGGGGGTTT
NNCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATATATTTTGGATATTAGC
CCTCTGTTGGATGAGGAGCTGGTAAAGAAAAAAATCTTTTCAATTCTGCA
TGGCTGTTTCCTGGGAAGGTGAAGTCCACAGGAGTTGGGGGCATGGGCAG
GGTGGACAGTGGGGAGGGAATGGGGGAGGCAGTGGAATGGGTCTTTGGGA
ATAGAATCTTTTTAATAGGGNAGTTAGGTGGTAGGAGGGTTATTCACCTG
TTCTTCTGACTGGTCCGCCGCAATTTACTTAGGTTTACAGCCCCCGCGGC
CCGAGCAGCAACCCCTATTTCCCCCCGCCCCCAGGGGCGAGGCGAAGGAT
GCACCGCTTTTATGTTTCTCCCCCCCCCCATTTTTTTTTTCTTTATTTAC
AACATTTTCTAATGTTGTACCATTTCCCCTCCCTAATTCCCCACTCTTGC
CTCTTTCCTCCCCAATTTTTTGTCCCTTCTTCATTCTTCGACCCCCCCTT
TCCCTTACCGTTTTCCCCTCCCTTCCCCCCTTCTCTATCCCCTCCCTATA
CCTGATCTTCTTTTTATATCCCCTTCTCTCCTATCCTCCTACTCCTCTCT
GTCTAAACATTTACCCCCTCACATGTCTACCCTCTATTTATCTTTTTTTT
TCTTCTCTTTTTTGCCCCCCCCCCCCCCCCTTTCTTCCTGCCTCCTGTCA
TCTCTCGTCCACCACCTCACCCTCCCTTTTCCCCTTCCCACTTCCTCCTC
GCTTTTTATCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_k22.b1 MSMg01no401_k22.b1 CHROMAT_FILE:
MSMg01no401_k22.b1 PHD_FILE: MSMg01no401_k22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:22 2005
         (459 letters)



>mm_chr16_55846850_55847708
          Length = 859

 Score =  468 bits (242), Expect = e-136
 Identities = 292/324 (90%), Gaps = 27/324 (8%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattcactctgtattccaggctggcctcatgatcctagtgatacatctgtctctgcct 62
           |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 ggaattcactgtgtagaccaggctggcctcatgatcctagtgatacatctgtctctgcct 466

                                                                       
Query: 63  tactggtgcaaggctcgggctacgtgccatcacccccccccc------cacacacacaca 116
           |||||||||||||||||||||| |||||||||||||||||||      ||||||||||||
Sbjct: 465 tactggtgcaaggctcgggctatgtgccatcacccccccccccacacacacacacacaca 406

                                                                       
Query: 117 tttaactttgttatttcttatgttagacaagttttcttataaggttttcactatggggta 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tttaactttgttatttcttatgttagacaagttttcttataaggttttcactatggggta 346

                                                                       
Query: 177 aacttaatagtcataagaaacagaaccaccttttttttttt------cttattggaaaaa 230
           |||||||||||||||||||||||||||||||||||||||||      |||||||||||||
Sbjct: 345 aacttaatagtcataagaaacagaaccacctttttttttttttttttcttattggaaaaa 286

                                                                       
Query: 231 caaggaatttgcttt----------cttttgtttttt-----aattcaggagtataattt 275
           |||||||||||||||          ||||| ||||||     ||||||||||||||||||
Sbjct: 285 caaggaatttgctttttttctttttctttttttttttttttaaattcaggagtataattt 226

                                   
Query: 276 agattattttactttctaaaaaaa 299
           ||||||||||||||||||||||||
Sbjct: 225 agattattttactttctaaaaaaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space:   381201
Effective search space used:   381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)