BAC Information

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BAC

Clone NameMSMg01-402I07
Chromosome16 (Build37)
Map Location 37,279,288 - 37,279,704
singlet/doubletsinglet
Overlap geneStxbp5l
Upstream geneStfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq
Downstream geneGtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402I07.T7 (MSMg01no402_i07.b1)MSMg01-402I07.TJ (MSMg01no402_i07.g1)
ACCAG501646AG501647
length768744
length of high quality
(start - end)
360 (68 - 427)418 (71 - 488)
definitionCHROMAT_FILE: MSMg01no402_i07.b1 PHD_FILE: MSMg01no402_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:26 2005CHROMAT_FILE: MSMg01no402_i07.g1 PHD_FILE: MSMg01no402_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGACATTTACAGAAAAAACAACTCGGCAACCTCACAGAGAATG
AGCAAAAGAGAAAAATACCTGACAGATCTTTAAGAAAACACAAAGATAAG
CTTGATTAAAATGACAAGGATAATCCAGGAGTTGAAAGCTGAATTATACT
CGGCAACCCGCAGAAGCTTCTCTAACATAGACCTCATATTGAGACGCATT
AACTCAGTAGACTGAAATAAGACATCACACTCTATCTGGCCACAATACAA
TAATAATTAAGATCGATTTTTTTCTAACCTCTGGTAAGCACACAAACTCA
AAGAGTTAACTTTGCTAAATGATGAGTGGGGCAAAGAACAATGTCAATTT
TTAAAATCCCAGAACTAAATGAAAACACAACAAAACCTCTGGACACATTA
ACATCATTCTTACAAGAGAAATTTATAGCTATAAGCGCCTACATTAAAAA
TACCGAAAGAGCCCAAATGAATGACTTTATACATAATGGAACTTCCAAAT
TTGGAAATGCATTAACAAGCATAGCCTTATACTCCGCAGACCCGTTTGAA
CTTACATCACTTACAGGCTCAAATTCATTGATTTGGGATTTTCCCGATTA
CTCCCTTTTTTTCTTATCCATACCCTTTTAACCACAACCCTTTCGCCAAT
TAACTTTACCGACTGTTTTTTGTGACAGGATGTCCTCCATGGGTCTAGAA
CCACTTGACTCGTTTTTC
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATTGTGCAGATTCTTCGAAAACCATCTTG
GATCAAGTTTGGTAATAGAAAATCATTGGAAAAAGTAAAAAGTATTAGTT
TAAGTCAAGCTGTGTTGCTATTGGTGAGTGTGATTAAAGTCCAACCTATG
CAGCTTTAGTGCATGTCAATACCCATCAGCAGATAAGAGCAAAAGAATGG
ACAAACATAAGTATCAGTATTTCCCCAGGAGTTTTCTGTTTTCCTTAATA
TATTTCCTTAATATATTTAATATATTTTAATAAAAATATACTTCTCAGAA
ATTCTTTTTTAATTTAAAATAGATTTTTCCATGTAATGATTTCTGATTAT
AGTTTTCCCTCTGCCAGTATCCACCTCCCCTCCCCTTCCATGAAAATCTA
TACCTTTTTTTCTTTCTCCCATTATAATAAAAACAGGCATCTGAATAATA
AAACACTGTATTGTAAAATATTAACAGACCAATCTTAATAGTGCATATTA
TAAAAAAAGAGGCTAAGAAAAAGCCTATTCCCCTAGATGCTGAAATACTA
CATTTGTACCCACGTAAACCTCCTAATAACAAAATTGCAAACCCCTATGT
GTAAGTCAAAGATATATAAGGCTTAAAAACCAGACAAATATCCTTATGCA
AAGTACACCCTACATAATTCGTCACAAGTGCTCCATCTTTGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_i07.g1 MSMg01no402_i07.g1 CHROMAT_FILE:
MSMg01no402_i07.g1 PHD_FILE: MSMg01no402_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:26 2005
         (418 letters)



>mm_chr16_37279268_37280085
          Length = 818

 Score =  770 bits (398), Expect = 0.0
 Identities = 413/418 (98%), Gaps = 1/418 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattgtgcagattcttcgaaaaccatcttggatcaagtttggtaatagaaaatcattgga 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cattgtgcagattcttccaaaaccatcttggatcaagtttggtaatagaaaatcattgga 378

                                                                       
Query: 61  aaaagtaaaaagtattagtttaagtcaagctgtgttgctattggtgagtgtgattaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaaagtaaaaagtattagtttaagtcaagctgtgttgctattggtgagtgtgattaaagt 318

                                                                       
Query: 121 ccaacctatgcagctttagtgcatgtcaatacccatcagcagataagagcaaaagaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 317 ccaacctatgcagctttagtgcatgtcaatacccatcagcagataagagcaaaagaatga 258

                                                                       
Query: 181 acaaacataagtatcagtatttccccaggagttttctgttttccttaatatatttcctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 257 acaaacataagtatcagtatttccccaggagttttctgttttccttattatatttcctta 198

                                                                       
Query: 241 atatatttaatatattttaataaaaatatacttctcagaaattcttttttaatttaaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 atatatttaatatattttaataaaaatatacttctcagaaattcttttttaatttaaaat 138

                                                                       
Query: 301 agatttttccatgtaatgatttctgattatagttttccctctgccagtatccacctcccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 137 agatttttccatgtaatgatttctgattatagttttccctctgccagtatctacctcccc 78

                                                                     
Query: 361 tccccttccatgaaaatctatacctttttttctttctcccattataataaaaacaggc 418
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 77  tccccttccatgaaaatctatacc-ttttttctttctcccattataataaaaacaggc 21


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)