BAC Information

Click to search

BAC

Clone NameMSMg01-404G18
Chromosome16 (Build37)
Map Location 7,411,665 - 7,412,107
singlet/doubletsinglet
Overlap genenone
Upstream geneA2bp1
Downstream gene4930511J11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404G18.T7 (MSMg01no404_g18.b1)MSMg01-404G18.TJ (MSMg01no404_g18.g1)
ACCAG503095AG503096
length767754
length of high quality
(start - end)
464 (37 - 500)443 (64 - 506)
definitionCHROMAT_FILE: MSMg01no404_g18.b1 PHD_FILE: MSMg01no404_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:05 2005CHROMAT_FILE: MSMg01no404_g18.g1 PHD_FILE: MSMg01no404_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAA
ATTTACAATACAGCTGTGAGCTGTAGTGCTTGGAGGATGCTATGCCAGGG
AACTTAACCCTCCCCCACCCACACACCCATGTACTTGAGCACTTGGTCCC
ATCTGGTGATGCAGTTTTGGGAGTCTGTTGAACCTTTTGGAAGTAGACCA
TTTCTGGAGGAAGTAGGTTGCATAGAAGATGTTCATGTGCTTGATAGCCC
AACCCTGCTCCCAACCCTCTGTCTACAGCCTATGTTGAAAAAGCGAGAGG
ATTCAGAAGGATTCATTTCCTGCCATAGTGGTGTTCTCTTTTTCTGTATT
CTCCCCACCATGAAGGATTGTACACTCAACCTGTGAGCCAGAGTAAATGC
TTGCTTCTTGAAGTTTCTTCTTGTCAATGTTTTGGCAATAGAGATGTGAA
AAGTAGCCAGTGCAAGGGGTCCTTAGGCAAGTGGCTAGAAACTAGAGGAC
CCAATCACAGTATGTTTTCAAGCCCAGACCAATAATCCCATTTTTACTGG
CCTATAGTAAGATAGAAATGCGTTTTTGAATATAGATGCCTACCACTAGA
AATGGTCTTTGCATTTTTTTAAATTATTTTTTAATTTCCAAAATACGGGC
CCCTTTTATCCAAAACTGCGCTTTATCTTGCTTTATACCCAAAAAAGATT
TGTATTTTGTCCCGCCGGGTTTCCCCCCTCATTTTTTGTGAAATAAAAAA
AAAATCTCCCCCCCCCN
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCATGTTTGTGATTTCATACACAATGCAGGTTCTGGGC
TTGAAAATCTGGGGCGACTGGGAGGAGTCTGTTGATCTTTTTGCAGCCCC
CTTTTCTATTACTATCTTGACCCCATCTGGGGTTGAATGCTACAGCATCA
TGATAAATTGTTGCCTTGGATAACATCAACCAGGTGCACGCTGTAGCAGG
CCAGGGAAGTGGGAACGTGATGTTGTCAAATGGTTCCCTCTGGACCTGTC
TCTCCCTACTCTAAGAAAGGGGTCTGGTGAAAGAAGAACAGTTTCTCTTC
TCACCAGTTCAGCAGTTTCTCTCCCTTCCCCTCCTCGCCCTTTGCTTTTC
TTTCTCTCCCAAACCATGATCACCTGTCTTAGATATCGAAGCTACAAAAA
CTTTGTTTTCAAATCTCATGAAACTTTATTGATGGTTTAATATCCAACCG
ATCTTACGGGCATGCACGTAGGATGACGAGGAAAAGCTGGATCCCACCAC
TTTTTTTTTTTCTTTTTAAAGGTTCGCTTGGGTTTGATTTTACAGCAAAT
TTGTACCGCACGCCGGCAGTTTTCTAGCGTGACGTGAAAATTAATTATTT
GTGTGTCGGCCGCCCTTTACCCCCTCCACACGCCTAGAAAAAATCCTGTA
TAATTATTTTGCTATTTTTATTTTACTTCCATTCGTGTAATTACATTTTA
TTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_g18.g1 MSMg01no404_g18.g1 CHROMAT_FILE:
MSMg01no404_g18.g1 PHD_FILE: MSMg01no404_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:05 2005
         (443 letters)



>mm_chr16_7411465_7412307
          Length = 843

 Score =  849 bits (439), Expect = 0.0
 Identities = 442/443 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtttgtgatttcatacacaatgcaggttctgggcttgaaaatctggggcgactggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 catgtttgtgatttcatacacaatgcaggttctgggcttgaaaatctggggcgactggga 584

                                                                       
Query: 61  ggagtctgttgatctttttgcagcccccttttctattactatcttgaccccatctggggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ggagtctgttgatctttttgcagcccccttttctattactatcttgaccccatctggggt 524

                                                                       
Query: 121 tgaatgctacagcatcatgataaattgttgccttggataacatcaaccaggtgcacgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgaatgctacagcatcatgataaattgttgccttggataacatcaaccaggtgcacgctg 464

                                                                       
Query: 181 tagcaggccagggaagtgggaacgtgatgttgtcaaatggttccctctggacctgtctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tagcaggccagggaagtgggaacgtgatgttgtcaaatggttccctctggacctgtctct 404

                                                                       
Query: 241 ccctactctaagaaaggggtctggtgaaagaagaacagtttctcttctcaccagttcagc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ccctactcaaagaaaggggtctggtgaaagaagaacagtttctcttctcaccagttcagc 344

                                                                       
Query: 301 agtttctctcccttcccctcctcgccctttgcttttctttctctcccaaaccatgatcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 agtttctctcccttcccctcctcgccctttgcttttctttctctcccaaaccatgatcac 284

                                                                       
Query: 361 ctgtcttagatatcgaagctacaaaaactttgttttcaaatctcatgaaactttattgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ctgtcttagatatcgaagctacaaaaactttgttttcaaatctcatgaaactttattgat 224

                                  
Query: 421 ggtttaatatccaaccgatctta 443
           |||||||||||||||||||||||
Sbjct: 223 ggtttaatatccaaccgatctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)