BAC Information

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BAC

Clone NameMSMg01-405L04
Chromosome16 (Build37)
Map Location 81,775,607 - 81,776,063
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039724, Ncam2
Downstream geneLOC621470, LOC435484, Pgk1-ps1, EG665260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405L04.T7 (MSMg01no405_l04.b1)MSMg01-405L04.TJ (MSMg01no405_l04.g1)
ACCAG504068AG504069
length798752
length of high quality
(start - end)
249 (73 - 321)445 (79 - 523)
definitionCHROMAT_FILE: MSMg01no405_l04.b1 PHD_FILE: MSMg01no405_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:45 2005CHROMAT_FILE: MSMg01no405_l04.g1 PHD_FILE: MSMg01no405_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCAAGTTACCGCTTCACAGAACTCAAAATGGTCAACAAGCA
GAAGGGCTCAAGTGAAGATGCCTTCGTGCCTCTTGGGAGAGAAAGAAAAC
AATCATGAGGTGGGAGGGATGGAGGGACCTGGGAGAGAAAGGAAAGAGGA
CATGGAAGAGGGGATCATGGTCTAGTATTGGGTGGGGGGAAAGGACTGAA
CCCCTGAGGGCCAGGAGAAAGGAGGGAAACAGGCAATCTTGGGAGGTTGG
AGGTTGGGGGAACCCTCCATAATGTTTTTTTAGACATGGGAGGTAAAGGG
CCCAAGTGAGGATGCCTCAGTCCCACTTGGGAGGGAGAAGAAAGCAACTA
CAAGGGGGGAGGGAGGGAACTGGGAGGCAATAGGAATGGCGTATCTTCAC
TCAGCTCTTCCTCTCCCCCTCCCCTTCTCCTTTTTTTTTCCTTTTTTTTC
CCTTTTTTTCTCCTCCCCCCCCCCCTCACCTTTTCCCTTTTTTTTCTTCT
TTTTTATTTTTTTTTCGTTGCTCTTCTCTCTCCCCCTTTTTTTTCCTGCC
CTCCTCCTCTCCTTCCGCCCTTCCCTCTATTCTCTCTCTCCTCTTCGTCC
CTTTTTTTTTTCTTTCCCCCCATCCTGCCCTTCTTCCTCCTTTTCCCCCT
TTTTCCCCTCCCCCCTCCTTTCCCCTCCCTCTTTCCCCTGCCTTCCCGTC
TGTCGTGCCTTTATCCCCCTTCCCCCCGCCCTCTTATCTTTCTTCCCN
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTAAAAGAAATAATAAAAG
GAAATGTTTTATTTTGGTAAATGTTTAGTCTAAATAATTGTTTGCTTCTC
TTTATTTTATAAGAAATACTACAACAATTCTGCTCTATACCTGCAAAGGA
GAAGTGAGTAAGTCTAACAACCAGTTGAAAATTTAGTATTAAGGAATTTT
TAGCACAAGAATATTTTTTATATCTGGAATCTCTAAGAGTCTCTTAATGT
CAATCAGACATATATATGTGTGATTGTACACATTTTTATGTGGTACATTT
ACTAGAAATTTAATAAAACAAATGAATATATATATAATATTTGTTAAAAT
ACATAATAAAAAACTTGTTAACTCTGAACTATTGATAATGCTTTAAATAA
AAATTATTTACTGATACAACAAGTGATTATATATATATATATATATATAT
ATATATATATATATATATATATACTATATGGCGCCTCACCTCTCCTCTCT
CCTTGTCCATTTTTTTCATTGATTCACCTCCTCCCATTGTAACTTCTTGT
CCTGCCCCTTATCTGGATTCTTGCCATATCCATATCCCGATTTTTTTCCT
TTTTCCCCCCTTTTTCCCTCTTTATTTTCATATTTCCCCATAATTCCTAT
TATCCCCTTTTATTTTCATTCCCCCTTTTATCCTTTTTCACCCCCCTTTT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_l04.g1 MSMg01no405_l04.g1 CHROMAT_FILE:
MSMg01no405_l04.g1 PHD_FILE: MSMg01no405_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:45 2005
         (445 letters)



>mm_chr16_81775405_81776249
          Length = 845

 Score =  806 bits (417), Expect = 0.0
 Identities = 442/457 (96%), Gaps = 14/457 (3%)
 Strand = Plus / Plus

                                                                       
Query: 3   tttaaaagaaataataaaaggaaatgttttattttggtaaatgtttagtctaaataattg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tttaaaagaaataataaaaggaaatgttttattttggtaaatgtttagtctaaataattg 262

                                                                       
Query: 63  tttgcttctctttattttataagaaatactacaacaattctgctctatacctgcaaagga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttgcttctctttattttataagaaatactacaacaattctgctctatacctgcaaagga 322

                                                                       
Query: 123 gaagtgagtaagtctaacaaccagttgaaaatttagtattaaggaatttttagcacaaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaagtgagtaagtctaacaaccagttgaaaatttagtattaaggaatttttagcacaaga 382

                                                                       
Query: 183 atattttttatatctggaatctctaagagtctcttaatgtcaatcagacatatatatgtg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atattttttatatctggaatctctaagagtctcttaatgtcaatcagacatatatatgtg 442

                                                                       
Query: 243 tgattgtacacatttttatgtggtacatttactagaaatttaataaaacaaatgaatata 302
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 443 tgattgtacacatttttatgtggtatatttactagaaatttaataaaacaaatgaatata 502

                                                                       
Query: 303 tatataatatttgttaaaatacataataaaaaacttgttaactctgaactattgataatg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tatataatatttgttaaaatacataataaaaaacttgttaactctgaactattgataatg 562

                                                                       
Query: 363 ctttaaataaaaattatttactgatacaacaagtgattatatatatatat-------at- 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||       || 
Sbjct: 563 ctttaaataaaaattatttactgatacaacaagtgattatatatatatatggtggctatt 622

                                                
Query: 415 --atatat-at---atatatatatatatatatatata 445
             |||||| ||   |||||||||||||||||||||||
Sbjct: 623 ttatatattattttatatatatatatatatatatata 659



 Score = 89.7 bits (46), Expect = 4e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 400 tatatatatatatatatatatatatatatatatatatatatatata 445
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatatatatatatatatatatatatatatatatatatatatatata 636



 Score = 89.7 bits (46), Expect = 4e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 400 tatatatatatatatatatatatatatatatatatatatatatata 445
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tatatatatatatatatatatatatatatatatatatatatatata 638



 Score = 89.7 bits (46), Expect = 4e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 400 tatatatatatatatatatatatatatatatatatatatatatata 445
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatatatatatatatatatatatatatatatatatatatatatata 640



 Score = 89.7 bits (46), Expect = 4e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 400 tatatatatatatatatatatatatatatatatatatatatatata 445
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tatatatatatatatatatatatatatatatatatatatatatata 642



 Score = 89.7 bits (46), Expect = 4e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 400 tatatatatatatatatatatatatatatatatatatatatatata 445
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tatatatatatatatatatatatatatatatatatatatatatata 644



 Score = 89.7 bits (46), Expect = 4e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 400 tatatatatatatatatatatatatatatatatatatatatatata 445
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tatatatatatatatatatatatatatatatatatatatatatata 646



 Score = 89.7 bits (46), Expect = 4e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 400 tatatatatatatatatatatatatatatatatatatatatatata 445
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tatatatatatatatatatatatatatatatatatatatatatata 648



 Score = 89.7 bits (46), Expect = 4e-22
 Identities = 46/46 (100%)
 Strand = Plus / Minus

                                                         
Query: 400 tatatatatatatatatatatatatatatatatatatatatatata 445
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tatatatatatatatatatatatatatatatatatatatatatata 650



 Score = 87.7 bits (45), Expect = 1e-21
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                        
Query: 401 atatatatatatatatatatatatatatatatatatatatatata 445
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 atatatatatatatatatatatatatatatatatatatatatata 652



 Score = 66.5 bits (34), Expect = 4e-15
 Identities = 43/46 (93%), Gaps = 2/46 (4%)
 Strand = Plus / Minus

                                                         
Query: 400 tatatatatatatatatatatatatatatatatatatatatatata 445
           |||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct: 667 tatatatatatatatatatatatatatatataaa-ata-atatata 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 112
Number of extensions: 54
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 14
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)