BAC Information

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BAC

Clone NameMSMg01-407H21
Chromosome16 (Build37)
Map Location 53,327,501 - 53,328,036
singlet/doubletsinglet
Overlap genenone
Upstream geneAlcam, LOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407H21.T7 (MSMg01no407_h21.b1)MSMg01-407H21.TJ (MSMg01no407_h21.g1)
ACCAG505438AG505439
length734746
length of high quality
(start - end)		536 (48 - 583)57 (74 - 130)
definitionCHROMAT_FILE: MSMg01no407_h21.b1 PHD_FILE: MSMg01no407_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:09 2005CHROMAT_FILE: MSMg01no407_h21.g1 PHD_FILE: MSMg01no407_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAACTACATAAAGCTGATGTGTGTGTGTGTGTGTGGGTGTGT
GTGTGTGTGTGTGTACATATAACAGTAATTAGAGCTAGGGTAAAACCCAA
ATTGTATCATTTACAAGAAATTATAATTGACTGTATCAAATGTTGGAGAG
ATTTTATCAAATATGAGACAAAAATAATCATAATATTGTAGAAATGAATA
TTATAGATTACCATGCAAATTTTATTCCATATTCTTAGAATTATCAATTA
TCACCTTACAGAATTATTCATATATAGCTGACACAACCATATATTCTTTC
TATGGTAAACCTAAGCTCAGTGGCTGGGCAGTGTGAGACTCTTCCTTTTC
TGATAGAACAGGAGAAATTCTAATTTCAGAAAGCTTCCTTGTATTCAAGG
TACATTTTTTCTTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTT
CTTTCTTTCTTTCATTCTTTCTTTCTTCTTACACTTTTCTTTACTCCAAA
ATCTTACTCTTTTCCTTCCCTGNTAAGGATTCCCGAATACATTTCCAACT
ATACACCGTTATCCCAATGTTTGTTTTCCCTAAAACCTATGTGTATTCCT
TGAAAATGTTAATGACAGGGAAACTAACCTTCTA

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTANAAGGGGTCAGATTTACAGGTGA
TTGTGACCTACTCAGTTCAACGTAGTGTCGGGAACTCTGGTCCTCCTATA
TTTTAANCAGAGATTTTACTANTCAAATATGTTACTTTCAGAGCGCAATA
TTTTTTTATAAAGGGNNNNNNNNNAAAANNNNNNNNNNNNNNNNNNNNTN
TNNNNNNCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAGACAGCGGANNANNNANAANTTATCCCACAAACGCTGGGGGGGG
GATAGATTAGTTATTATTTTTTAAAAAATAAAAAACCCCCCCCCCCCCCA
CCCATACCCTCCCTGCCTTTTTTATCTCTTTTATTATATTATCTTTTTTT
TTTTTTTCTTCTAAATATTATAATCAATATACATTTATCCTNTNTTTTTT
TGTTATTATNATCATNCTCCTTATTTTTTTTTCTTNTGTGTTTTGTTTTT
TTATTNTGTTATTTTTTTTTCTTATATCTTTATATTTTTATTCTTCTCTT
CCTTTCTAATTTATTTTTCTTCCCCTCTACTTTTCTTTTTCTTCCCCCCT
ATACCACTANCAACTTTACCTTTCCTCCCCTACCCCTACTCTTCAACCTA
TTTCTTTACTCTCCCTCCCCTTTATTTTCCTGTGTTGGTGGGGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_h21.b1 MSMg01no407_h21.b1 CHROMAT_FILE:
MSMg01no407_h21.b1 PHD_FILE: MSMg01no407_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:09 2005
         (536 letters)



>mm_chr16_53327305_53328240
          Length = 936

 Score =  975 bits (504), Expect = 0.0
 Identities = 528/540 (97%), Gaps = 11/540 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctcaac-tacataaagctgatgtgtgtgtgtgtgtgtg-----g-gtgtgtgtg 56
           ||||||||||||  ||||||||||||||||||||||||||||||     | |||||||||
Sbjct: 197 ggaattctcaacaaacataaagctgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 256

                                                                       
Query: 57  tgtgtgtgtgtacatataacagtaattagagctagggtaaaacccaaattgtatcattta 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgtgtgtgtgtacatataacagtaattagagctagggtaaaacccaaattgtatcattta 316

                                                                       
Query: 117 caagaaattataattgactgtatcaaatgttggagagattttatcaaatatgagacaaaa 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 caagaaattataattgactgtatcaaatgttggagagattttatcaaatatgagacaaaa 376

                                                                       
Query: 177 ataatcataatattgtagaaatgaatattatagattaccatgcaaattttattccatatt 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ataatcataatattgtagaaatgaatattatagattaccatgcaaattttattccatatt 436

                                                                       
Query: 237 cttagaattatcaattatcaccttacagaattattcatatatagctgacacaaccatata 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cttagaattatcaattatcaccttacagaattattcatatatagctgacacaaccatata 496

                                                                       
Query: 297 ttctttctatggtaaacctaagctcagtggctgggcagtgtgagactcttccttttctga 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttctttctatggtaaacctaagctcagtggctgggcagtgtgagactcttccttttctga 556

                                                                       
Query: 357 tagaacaggagaaattctaatttcagaaagcttccttgtattcaaggtacattttttctt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tagaacaggagaaattctaatttcagaaagcttccttgtattcaaggtacattttttctt 616

                                                                       
Query: 417 ttccttccttccttccttccttccttccttccttccttccttccttccttccttccttcc 476
           ||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||
Sbjct: 617 ttccttccttccttccttccttc-tt---tccttccttccttccttccttccttccttcc 672

                                                                       
Query: 477 ttccttccttccttccttccttcctttctttctttctttcattctttctttcttcttaca 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ttccttccttccttccttccttcctttctttctttctttcattctttctttcttcttaca 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 112
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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