NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCTGACGAATACTGAATGGCTGAGAAGCACCTGAAAAAT
GTTCAACATCCTTAATCATCAGGAAAATGCAAATCAAAACAACCCTGAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCAAGAATGTGGAGAAAGAGGAACACTCACCCACTGCTGGT
GGGATTGCAAGCTTGTACAACCACTTTGGAAGTCAGTCTGGAGGTTCCTC
AGAAAATTGGACATAGTACTACCGGAAGATCCAGCAATACCTCTCCTGGG
CATATACCCAGAAGAAGTTCCAACTGGTAATAAGAACACATGCTCCACTA
TGTTCATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCAACAGAAGAA
TGGATACAGAAAATGTGGTACATTTACACAATGCAGTACTACTCAGCAAT
TAAAAACAATGAATTTATGAAATTCTTGGACAAATGGATGCATCTGGAGG
ATATCATCCTTAGTGAGGTAACCCAATCACAAAAGAAGTCATTAGATATG
CACTCACTGATAAGTGAATATGAGCCCAGAAACATAGAAGACCCCAGATA
CAATTTGCCAAACCCAAGAAAATCCCGAAGAGGGAAAACCAAGGGGGGGG
AACTTCATTCCTCCTTAAATTGGGAACAAAATATCCCTGAAAGGAGGTTC
A

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCCCTCAAGTTTTCCTCTG
ATTTTCATACCCACTTGGAGGAATGTGCACTCCCCCAATAAATAAATGTA
CTAATACTAAAAAAAAAAAACAGATTAAGCAGTAAGTTATATACTGAAGA
TTTATGACAATCACATTTTTTGAGGCATCTATGACCGGTTTTATGCTTGT
ATATAAATAACCAGTTAGTAGAATTTGTTTTGTTTTGTTTTGTTTTTTTA
AGATTTATTTATTTATTTATTTTATGTAAGTGAATACAGATGGTTGTGAG
CCTTCATGTGGTTGTTGGGAGTTGAATTTTAAGACCTCTCTCACTCTGGT
CAACCCTGACCACTCCGGTTGGCCCCCCTCACTCAGTCCCTGCTCACTCT
GTCCCAAAGATTTATTTATTATTATACATAAGTTCCCTGTAGTTGACTTC
AGACACTCCATAATAAAGTGTCATATCTTTTATCAGGTGTCTGCCGGCCC
CCTCTCTCTTTGTTGATATTTGGACTTTCCAACTCCCCGAGATTGGTTCG
GGTTCCTTTATTGGCGAGTTTTCCCGCCCACGTCAAATAATCGCTTTTCC
CCCAGCCTCGTATCTTATTCCTATTATCCACTTTTCCCACGGTGTGCCTC
TTATTTTCTCCTTTTCCCTTTTTCCCCCGTTTCCTCCCCGTTCCCGTATT
TCTCCC

Query= MSMg01no407_n08.g1 MSMg01no407_n08.g1 CHROMAT_FILE:
MSMg01no407_n08.g1 PHD_FILE: MSMg01no407_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:36 2005
         (409 letters)



>mm_chr16_48327587_48328392
          Length = 806

 Score =  712 bits (368), Expect = 0.0
 Identities = 399/416 (95%), Gaps = 14/416 (3%)
 Strand = Plus / Plus

                                                                       
Query: 3   tccctcaagttttcctctgattttcatacccacttggaggaatgtgcactcccccaataa 62
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 203 tccctcaagttttcctctgattttcatacctacttggaggaatgtgcactcccccaataa 262

                                                                       
Query: 63  ataaatgtactaatactaaaaaaaaaaaacagattaagcagtaagttatatactgaagat 122
           ||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||
Sbjct: 263 ataaatgtactaatactaaaaaaaacaa---gattaagcagtaagttatatactgaagat 319

                                                                       
Query: 123 ttatgacaatcacattttttgaggcatctatgaccggttttatgcttgtatataaataac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttatgacaatcacattttttgaggcatctatgaccggttttatgcttgtatataaataac 379

                                                                       
Query: 183 cagttagtagaatttgttttgttttgttttgtttttttaagatttatttatttatttatt 242
           | ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 380 ccgttagtagaatttgttttgttttgtttt--ttttttaagatttatttatttatttatt 437

                                                                       
Query: 243 t--------tatgtaagtgaatacagatggttgtgagccttcatgtggttgttgggagtt 294
           |        |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tatttattttatgtaagtgaatacagatggttgtgagccttcatgtggttgttgggagtt 497

                                                                       
Query: 295 gaattttaagacctctctcactctggtcaaccctgaccactccggttggcccccc-tcac 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 498 gaattttaagacctctctcactctggtcaaccctgaccactccggttggccccccctcac 557

                                                                   
Query: 354 tcagtccctgctcactctgtcccaaagatttatttattattatacataagttccct 409
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tcagtccctgctcactctgtcccaaagatttatttattattatacataagttccct 613


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 806
Length adjustment: 9
Effective length of query: 400
Effective length of database: 797
Effective search space:   318800
Effective search space used:   318800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)