BAC Information

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BAC

Clone NameMSMg01-409I07
Chromosome16 (Build37)
Map Location 75,527,901 - 75,528,287
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409I07.T7 (MSMg01no409_i07.b1)MSMg01-409I07.TJ (MSMg01no409_i07.g1)
ACCAG506984AG506985
length800913
length of high quality
(start - end)
456 (68 - 523)243 (76 - 318)
definitionCHROMAT_FILE: MSMg01no409_i07.b1 PHD_FILE: MSMg01no409_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:54 2005CHROMAT_FILE: MSMg01no409_i07.g1 PHD_FILE: MSMg01no409_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAA
TTCCAATAAATTGCCACGGTTTGAGTGTGGCTATTCATGTGAATGATGTG
TAAGTGTGTGTTTAGTTACAAAGAGATCCATGGTTTAGAAATCACTAGAT
TGAATAATGAAAGGGGTCGATGATGTGGTAATAGCCTTTTAGCTGCCTTA
TACCTTCCAGCTCCCAGTTCCCGTTTTTTTTACAGGTTAGAGTGAAGACC
AGGAAAGGCAGGAGCTCTTGAAGCTGCTCTCTGTATTACCTTCACAGTTA
GACAAAGAGCGATGATTGTGCTCTTTCTAGTGCTTAGCTTACATTCTCTT
ATTCCGTACAGTCCCAGCTCTAAAGCCCGGAAATGGTGCTCCCCATGGTG
TGTAAGGCTTCCCACATCAATTAACTTACAACAATGTCTGCATTAATTAG
CCTTTCCTCGCCTTGACACAAGCTAGGGTCACCTGGGAAGAGGGAAATTT
GGCTGAGAAGATGACTGTTTAAGCAAGCTGTATAAAAATGTCTTTCTGGA
CAGGTTTTGCTAGGTTACTTAAGAAAGCATGGCGAGCATGCAGAAGCTTA
GCTAGTATGCATCCTTCCTCCCTGGCCTTTGCTTCAATCTCTGGCCCCCA
GTTCTTGCCTTGAGATCCTGCCCTTGATTTCCCCCTCACCGTGCCCTTGT
TAATGGGATCCCCCAAAAACAATTATACCCTTTCAATCCCTACTTCTTTT
TTATTTCCCTAAGGCTTCCTTCTTCCCCATCCCACACAATTTCCTCGGCG

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTATTTGTTGAGATGCCTTTATTGA
AAGAGTCCAGTCTTGTATTGATAACACACACACATACACACACACACACA
CACACACACACACTCACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACACCAGCTCCCACATACCAGCTCCCA
CAGCAGTTAAATTCTAAATTCATTCTAAAATTCAAATAAGTAATTTACTC
CTCCGTGTGCGTGTGTGTGAGTGTGTTTGTGTGCGCGAGAGTGCGCGTGC
GCAACCAAGATATTTGTCTGCCCCCCCCGCAGCGGGAGGGAGTAACCGAT
CCTGTCTCATATATCGAACCCCCCCAGACCGGGCGTATCGGATAATCCGC
GACAAAAACGCTGGAAACATAGATCCGACGCCCGTCGAAAGTGTAAAACG
ACCTCAATCAAACGAATAGAACTATGAAATCACCATTATATGTATCTGAA
TGTCTTAAACACCCAAAAACTTACATGTTGTGTGTGTTTTAAAAAAAAGA
GTAAAACAAAATAAAGTAACAACAGAAACACTCGAATAACAAAATCTGCG
TACGAGACATTATCTCCGCGCTAACCACACTACCGATAACGTCACGAAAC
CATATGCAAACGAAGCACTACTATCTTATCCGAGTCCGTGTTTAAGAACA
CCTCGACAAAATATATAAATTATACTCGACGCGCCGTCATATCGTATTAC
TACACGATATCATCCAACTCATCGCTACAATTCCCGCTCATCCTGTATAT
GTATTACACAACCACTTAATAAACACTACCGCGAACGGAGCGAGAACACA
AATATAGCACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_i07.b1 MSMg01no409_i07.b1 CHROMAT_FILE:
MSMg01no409_i07.b1 PHD_FILE: MSMg01no409_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:54 2005
         (456 letters)



>mm_chr16_75527901_75528754
          Length = 854

 Score =  696 bits (360), Expect = 0.0
 Identities = 381/390 (97%), Gaps = 6/390 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtttgagtgtggctattcatgtgaatgatgtgtaagtgtgtgtttag-ttacaaagaga 59
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 387 ggtttgagtgtggctattcatgtgaatgatgtgtaagtgtgtgttttgattacaaagaga 328

                                                                       
Query: 60  tccatggtttagaaatcactagattgaataatgaaaggggtcgatgatgtggtaatagcc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tccatggtttagaaatcactagattgaataatgaaaggggtcgatgatgtggtaatagcc 268

                                                                       
Query: 120 ttttagctgccttataccttccagctcccagttcccgttttttttacaggttagagtgaa 179
           |||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||
Sbjct: 267 ttttagctgccttataccttccagctcccagttcccg---tttttacaggttagagtcaa 211

                                                                       
Query: 180 gaccaggaaaggcaggagctcttgaagctgctctctgtattaccttcacagttagacaa- 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 210 gaccaggaaaggcaggagctcttgaagctgctctctgtattaccttcacagttagacaaa 151

                                                                       
Query: 239 -agagcgatgattgtgctctttctagtgcttagcttacattctcttattccgtacagtcc 297
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gagagcgatgattgtgctcattctagtgcttagcttacattctcttattccgtacagtcc 91

                                                                       
Query: 298 cagctctaaagcccggaaatggtgctccccatggtgtgtaaggcttcccacatcaattaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  cagctctaaagcccggaaatggtgctccccatggtgtgtaaggcttcccacatcaattaa 31

                                         
Query: 358 cttacaacaatgtctgcattaattagcctt 387
           ||||||||||||||||||||||||||||||
Sbjct: 30  cttacaacaatgtctgcattaattagcctt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 854
Length adjustment: 10
Effective length of query: 446
Effective length of database: 844
Effective search space:   376424
Effective search space used:   376424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)