Query= MSMg01no412_j20.b1 MSMg01no412_j20.b1 CHROMAT_FILE:
MSMg01no412_j20.b1 PHD_FILE: MSMg01no412_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:02 2005
(465 letters)
>mm_chr16_90820854_90821727
Length = 874
Score = 750 bits (388), Expect = 0.0
Identities = 450/484 (92%), Gaps = 29/484 (5%)
Strand = Plus / Minus
Query: 1 cactgctgacagggaagtagttcagggtgtgggaacagagccggcttggactagcagtgt 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 545 cactgctggcagggaagtagttcagggtgtgggaacagagccggcttggactagca--gt 488
Query: 61 gcgt--gggacaaagagatgtcaagagctgctgagtctcttttgatatgcacaaatattt 118
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gcgtgcgggacaaagagatgtcaagagctgctgagtctcttttgatatgcacaaatattt 428
Query: 119 taggacagtctatgtggtttttccttatggttctcaggttgggaaacag-----aaatcg 173
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 427 taggacagtctatgtggtttttccttatggttctcaggttgggaaatagaaatcaaatcg 368
Query: 174 atattaattcaaatgttaccaaggccttatcttctcccaaaaatgctctgtgag-ctgtc 232
| | ||||||||||||||||||||||||||||||||||||| ||||| |||||| || ||
Sbjct: 367 a-aataattcaaatgttaccaaggccttatcttctcccaaagatgctgtgtgagcct-tc 310
Query: 233 tcatgtctgcttctct------cttttttctgtgtcaacatgtgaac-----tcttacgt 281
|||||||||||||||| | |||||||||||||||||| ||||||||
Sbjct: 309 tcatgtctgcttctctcaccaac------ctgtgtcaacatgtgaactctcatcttacgt 256
Query: 282 gcacccgtgacatgggctacctgtatggtgggctccagtctaggaacctctgccagaatc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gcacccgtgacatgggctacctgtatggtgggctccagtctaggaacctctgccagaatc 196
Query: 342 tgtgtcatggtgcttggacttccagtttctaaaacagttggctaaagaaacctctttata 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tgtgtcatggtgcttggacttccagtttctaaaacagttggctaaagaaacctctttata 136
Query: 402 ggctattcagcctcaagtattttgttatagcaacataaaaacacattggtcttttgtatg 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ggctattcagcctcaagtattttgttatagcaacataaaaacacattggtcttttgtatg 76
Query: 462 ctgc 465
||||
Sbjct: 75 ctgc 72
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 874
Length adjustment: 10
Effective length of query: 455
Effective length of database: 864
Effective search space: 393120
Effective search space used: 393120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_j20.g1 MSMg01no412_j20.g1 CHROMAT_FILE:
MSMg01no412_j20.g1 PHD_FILE: MSMg01no412_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:02 2005
(453 letters)
>mm_chr16_90686293_90687145
Length = 853
Score = 837 bits (433), Expect = 0.0
Identities = 448/453 (98%)
Strand = Plus / Plus
Query: 1 ctcacccaacaaggaagatacacagttttaaactcatgaatgggggtggagagatggctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ctcacccaacaaggaagatacacagttttaaactcatgaatgggggtggagagatagctc 260
Query: 61 tgcagttacgagcactagctgttctcctaggacccaggttcagttctcagaacccagaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcagttacgagcactagctgttctcctaggacccaggttcagttctcagaacccagaag 320
Query: 121 gttgctcactattttcttgtgatttcagtcctaggggatctgatgtcctcgtctgacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgctcactattttcttgtgatttcagtcctaggggatctgatgtcctcgtctgacttt 380
Query: 181 aggagcactgcaaatatgtggcacacagacatacagatggacaaaatacccgtatacacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggagcactgcaaatatgtggcacacagacatacagatggacaaaatacccgtatacacc 440
Query: 241 aaacaatatatttaaaataaaaatttaactcgtcacttgcttgtttctggaatttttcct 300
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacaatagaaataaaataaaaatttaactcgtcacttgcttgtttctggaatttttcct 500
Query: 301 ttgttacttttgaactgtagataactctagtaaataaaactgagcaaagacagcctcagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgttacttttgaactgtagataactctagtaaataaaactgagcaaagacagcctcagt 560
Query: 361 gcgaggctctgctgccgtgtacactatgaaagaatacttgctaataaaaaggaatgaaat 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcaaggctctgctgccgtgtacactatgaaagaatacttgctaataaaaaggaatgaaat 620
Query: 421 aataaagcatacaatggggacggacagttaaga 453
|||||||||||||||||||||||||||||||||
Sbjct: 621 aataaagcatacaatggggacggacagttaaga 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space: 373449
Effective search space used: 373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
