Query= MSMg01no413_g07.b1 MSMg01no413_g07.b1 CHROMAT_FILE:
MSMg01no413_g07.b1 PHD_FILE: MSMg01no413_g07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:04 2005
(554 letters)
>mm_chr16_71478587_71479541
Length = 955
Score = 787 bits (407), Expect = 0.0
Identities = 506/577 (87%), Gaps = 61/577 (10%)
Strand = Plus / Minus
Query: 36 taattggataaatttatgaaagtaaacaatgtttcattgtgcatttgttcaaatgtgaga 95
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 953 taattagataaatttatgaaagtaaac---gtttcattgtgcatttgttcaaatgtgaga 897
Query: 96 gtatctttttctaacaaacactatttatgattacatggcctccctcaaagtaaattttaa 155
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 896 gtatctttttctaacaaacactgtttatgattacatggcctccctcaaagtaaattttaa 837
Query: 156 agcttgaacctgtgattgactcttcttctatattatatggggtacttgattctcacat-- 213
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 836 agcttgaacctgtgattgcctcttcttctatattatattgggtacttgattctcacattt 777
Query: 214 -----------------------------tta--------------------------ac 218
||| ||
Sbjct: 776 gactgctccattgataccaagcttctgtattatatggggtacttggttctcacatttgac 717
Query: 219 tgttccattgataccaagctgtgcattacataaggtcttcagggtggactttttgacact 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tgttccattgataccaagctgtgcattacataaggtcttcagggtggactttttgacact 657
Query: 279 gtcttatcatcattataagtgttttaggattttgcttatgtttagtcattaatgagagag 338
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 656 gtcttaacatcattataagtggtttaggattttgcttatgtttagtcattaatgagagag 597
Query: 339 ctaacttctctagagctctgtcaaagatgtgtcaccacacatttccttttaaagattcca 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ctaacttctctagagctctgtcaaagatgtgtcaccacacatttccttttaaagattcca 537
Query: 399 gttgttagcttttataaatttggttttatgtcacattgttatgtggataagat-gaacct 457
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 536 gttgttagcttttataaatttggttttatgacacattgttatgtggataagattgaacct 477
Query: 458 cttttgcctatgcgtgagtttattctaatttccatgaagttttataaacttgtttctctg 517
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 476 cttttgcctacgcgtgagtttattctaatttccatgaagtttgataaacttgtttctctg 417
Query: 518 gtttttttaatttaacatagattttagatcttgtggt 554
|||||||||||||||||| ||||||||||||||||||
Sbjct: 416 gtttttttaatttaacatggattttagatcttgtggt 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space: 514080
Effective search space used: 514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_g07.g1 MSMg01no413_g07.g1 CHROMAT_FILE:
MSMg01no413_g07.g1 PHD_FILE: MSMg01no413_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:04 2005
(453 letters)
>mm_chr16_71444270_71445125
Length = 856
Score = 779 bits (403), Expect = 0.0
Identities = 438/451 (97%), Gaps = 3/451 (0%)
Strand = Plus / Plus
Query: 1 agtattatctacatatagacataaatgttgaaggacaccacagtcagaatgtttttagtt 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 agtattgtctacatatagacataaatgttgaaggacaccacagtcagaatgtttttaatt 260
Query: 61 ggcttttccttaaaggtcatgaagagaataaagcccaaataagatttccaagtgttgt-- 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcttttccttaaaggtcatgaagagaataaagcccaaataagatttccaagtgttgtaa 320
Query: 119 -aagatcaccatgttaaaacaccaacaaagtctaggacagtatatatgcacagaatatac 177
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagatcaccatgataaaacaccaacaaagtctaggacagtatatatgcacagaatatac 380
Query: 178 tgaactcacgatgcacttcctatataatagattgaatttcagtttgaggacccaggtatg 237
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 tgagctcacgatgcacttcctatataatagattgaatttcagtttgagggcccaggtatg 440
Query: 238 tttttcatgtaactcccctgggaacttaataaaaacaacacacagacaattaagcaaaga 297
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 tttttcatgtaactaccctgggaacttaataaaaacaaggcacagacaattaagcaaaga 500
Query: 298 ggatataagagtatatcaaaggaaatttatagttaattttaagataacccttaaatatga 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatataagagtatatcaaaggaaatttatagttaattttaagataacccttaaatatga 560
Query: 358 aattgtttatagctctgaatatttaattatcttgacattgatactaacttaaaaggttga 417
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 aattgtttatagctctgaatatttaattatcttgaaattgatactaacttaaaaggttga 620
Query: 418 tttataacagccttgcaacttccagggacta 448
||||||| |||||||||||||||||||||||
Sbjct: 621 tttataaaagccttgcaacttccagggacta 651
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 856
Length adjustment: 10
Effective length of query: 443
Effective length of database: 846
Effective search space: 374778
Effective search space used: 374778
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
