BAC Information

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BAC

Clone NameMSMg01-413L24
Chromosome16 (Build37)
Map Location 74,830,515 - 74,955,365
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo2
Downstream geneLOC665042, D930038D03Rik, Rbm11, Stch, LOC546667, Samsn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413L24.T7 (MSMg01no413_l24.b1)MSMg01-413L24.TJ (MSMg01no413_l24.g1)
ACCAG510209AG510210
length729739
length of high quality
(start - end)		623 (38 - 660)494 (66 - 559)
definitionCHROMAT_FILE: MSMg01no413_l24.b1 PHD_FILE: MSMg01no413_l24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:31 2005CHROMAT_FILE: MSMg01no413_l24.g1 PHD_FILE: MSMg01no413_l24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:31:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,954,747 - 74,955,365)(74,830,515 - 74,831,008)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTC
CAAACATTTCTAAAGAGAGATCCTTGGAATTGTTGGAACAAACTACACAC
TTCTTATAGCTGAGAGATACTTTTGGCATTTATTCTGACTAGGCTTTACA
TAGAGCAATCCACTTACTTCTCACAAAAACTCAAAGAAGTTAAAACTAAT
TATCAGCCTTTTGCACATGAGAAACTTGCCTTTATACTAGCTGAGGCACA
AAAGGTCAAACACTTTGCAATCTTTAGTATCAATAATGAGAGGAAATGCT
GAATTCTATGTCTTGCTCCTTGTTATGTCATAGATCCCTGAGCAATAAGC
AAATGTGATGAATAGGCTCCACGCTAACAATATATTCTTTCAAATGATAC
TTATATATTTTAAAGAATAATGAAAATGTATCTTTTATTGTGGTTCATCT
TTAAATAATGTTATTCATAAAAAGTAGAATAAATCTAGCTCCTCCAATGC
AGGAGCTAGAGAAAGGACCCAAGGAGCTGAAGGGGTTTGCAGCCCTATAG
GAGGAACAACAGTTTGAACCAACCAGTACCCCCAGAGCTCCCTGAGACTA
AACCACCAACCAAATAAAACACATGGTGCGACTCATGGCTTTCACTGCAT
ATGTAGCAGAGGATGGCCTAGTCAATTATCAATAGGAAGAGAGGNCATTG
CTCCTGTGAAGGGTCTATGCCCCAGTATG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTAACTTTACAAAAAGGCAAAATTAATTTACAAAT
AATAGACTTGGCATAGACGATACCTACAGTTTTCAAAGGCAAAATCCTAA
ATATACCTTTATCATCTGTGAATGTTATTGATTTTTAAATAATTTGTTGA
AATCTACTAACATGCTTTCTGTCTATTTCCATGTTTCCTTTGAGGCTGTG
CCTAACTGTTCTTGCTATTATCTCAGTAGGAGTATAAGTCATTAAATAAA
TGTTTCAATTATATACCTCGTGAAAATATTGTATTTATACAAAATGATAT
ATAATAATATAAATTGTTTGAAAGATGTATTTATATTCATTATAAACTCA
AAATCTTTTCCAGTATGCATAACCTTTCAAAAATATTTCTTCTGTTATAT
AGAAATGTGTTAATATATTTCCCATATACATTGTATTTTTCAGTGTTATA
ACGGATATTATAGTTTGGATGAAATTTAAACAACAAAAGTTTCTCATCAC
TTTGAACCTGGGCGTCTAAAACTCTGGTGGCTCTGGATTCANGGTCTGGT
TAGACACTTGGATTTGCAAGTGCCTGCTTCTTCATTGTGTCCTAACTGGG
AAACACAGAGAATCTCTCTCCTGTTTTTAAGAAGTAACATCTCCTCTTGA
AACCACCAAATTTCTTGGTAATTTCTTAATAAACATTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_l24.b1 MSMg01no413_l24.b1 CHROMAT_FILE:
MSMg01no413_l24.b1 PHD_FILE: MSMg01no413_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:31 2005
         (623 letters)



>mm_chr16_74954500_74955522
          Length = 1023

 Score = 1197 bits (619), Expect = 0.0
 Identities = 619/619 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccaaacatttctaaagagagatccttggaattgttggaacaaactacacact 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 gaattcttccaaacatttctaaagagagatccttggaattgttggaacaaactacacact 807

                                                                       
Query: 65  tcttatagctgagagatacttttggcatttattctgactaggctttacatagagcaatcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 tcttatagctgagagatacttttggcatttattctgactaggctttacatagagcaatcc 747

                                                                       
Query: 125 acttacttctcacaaaaactcaaagaagttaaaactaattatcagccttttgcacatgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 acttacttctcacaaaaactcaaagaagttaaaactaattatcagccttttgcacatgag 687

                                                                       
Query: 185 aaacttgcctttatactagctgaggcacaaaaggtcaaacactttgcaatctttagtatc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 aaacttgcctttatactagctgaggcacaaaaggtcaaacactttgcaatctttagtatc 627

                                                                       
Query: 245 aataatgagaggaaatgctgaattctatgtcttgctccttgttatgtcatagatccctga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aataatgagaggaaatgctgaattctatgtcttgctccttgttatgtcatagatccctga 567

                                                                       
Query: 305 gcaataagcaaatgtgatgaataggctccacgctaacaatatattctttcaaatgatact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gcaataagcaaatgtgatgaataggctccacgctaacaatatattctttcaaatgatact 507

                                                                       
Query: 365 tatatattttaaagaataatgaaaatgtatcttttattgtggttcatctttaaataatgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tatatattttaaagaataatgaaaatgtatcttttattgtggttcatctttaaataatgt 447

                                                                       
Query: 425 tattcataaaaagtagaataaatctagctcctccaatgcaggagctagagaaaggaccca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tattcataaaaagtagaataaatctagctcctccaatgcaggagctagagaaaggaccca 387

                                                                       
Query: 485 aggagctgaaggggtttgcagccctataggaggaacaacagtttgaaccaaccagtaccc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aggagctgaaggggtttgcagccctataggaggaacaacagtttgaaccaaccagtaccc 327

                                                                       
Query: 545 ccagagctccctgagactaaaccaccaaccaaataaaacacatggtgcgactcatggctt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ccagagctccctgagactaaaccaccaaccaaataaaacacatggtgcgactcatggctt 267

                              
Query: 605 tcactgcatatgtagcaga 623
           |||||||||||||||||||
Sbjct: 266 tcactgcatatgtagcaga 248


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no413_l24.g1 MSMg01no413_l24.g1 CHROMAT_FILE:
MSMg01no413_l24.g1 PHD_FILE: MSMg01no413_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:31 2005
         (494 letters)



>mm_chr16_74830315_74831208
          Length = 894

 Score =  893 bits (462), Expect = 0.0
 Identities = 486/494 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaactttacaaaaaggcaaaattaatttacaaataatagacttggcatagacgatacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaactttacaaaaaggcaaaattaatttacaaataatagacttggcatagacgatacct 260

                                                                       
Query: 61  acagttttcaaaggcaaaatcctaaatatacctttatcatctgtgaatgttattgatttt 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 acagttttcaaaggcaaaatcctaattatacctttatcatctgtgaatgttattgatttt 320

                                                                       
Query: 121 taaataatttgttgaaatctactaacatgctttctgtctatttccatgtttcctttgagg 180
           ||||||||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||| 
Sbjct: 321 taaataatttgttaaaatctactaacatgctttctctctattttcatgttttctttgaga 380

                                                                       
Query: 181 ctgtgcctaactgttcttgctattatctcagtaggagtataagtcattaaataaatgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgcctaactgttcttgctattatctcagtaggagtataagtcattaaataaatgttt 440

                                                                       
Query: 241 caattatatacctcgtgaaaatattgtatttatacaaaatgatatataataatataaatt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 441 caattatatacctcgtgaaaatattgtatttatacaaaatgatatataataatacaaatt 500

                                                                       
Query: 301 gtttgaaagatgtatttatattcattataaactcaaaatcttttccagtatgcataacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttgaaagatgtatttatattcattataaactcaaaatcttttccagtatgcataacct 560

                                                                       
Query: 361 ttcaaaaatatttcttctgttatatagaaatgtgttaatatatttcccatatacattgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 ttcaaaaatatttcttctgttatatagaaatgtgttaatatatttcccatacacattgta 620

                                                                       
Query: 421 tttttcagtgttataacggatattatagtttggatgaaatttaaacaacaaaagtttctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttttcagtgttataacggatattatagtttggatgaaatttaaacaacaaaagtttctc 680

                         
Query: 481 atcactttgaacct 494
           ||||||||||||||
Sbjct: 681 atcactttgaacct 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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