Query= MSMg01no414_m04.b1 MSMg01no414_m04.b1 CHROMAT_FILE:
MSMg01no414_m04.b1 PHD_FILE: MSMg01no414_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:54 2005
(448 letters)
>mm_chr16_20344287_20345134
Length = 848
Score = 710 bits (367), Expect = 0.0
Identities = 388/399 (97%), Gaps = 8/399 (2%)
Strand = Plus / Minus
Query: 54 gaacttgccatggagagggaaggcaagcaggcaaaaagcaaagcttccttcttccatttt 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gaacttgccatggagagggaaggcaagcaggcaaaaagcaaagcttccttcttccatttt 789
Query: 114 ttcatgtgggctgccaccaagaggtgtggcccagatttaagtgggtctttgcacctccaa 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ttcatgtgggctgccaccaagaggtgtggcccagatttaagtgggtctttgcacctccaa 729
Query: 174 ggatccaatcgagaaaacccctctcctaggtgcttaactgcctagttgattcacatgtag 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ggatccaatcgagaaaacccctctcctaggtgcttaactgcctagttgattcacatgtag 669
Query: 234 tcacatcgatgtt----attttttacaataagccagtttctccttccagaagttactcag 289
||||||||| ||| | | ||||||||||||||||||||||||||||||||||||
Sbjct: 668 tcacatcgacgttagcca----tcacaataagccagtttctccttccagaagttactcag 613
Query: 290 agctactcttccgcctcttcttgctccccagggaagtcctctttggggatggccctcttc 349
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agctgctcttccgcctcttcttgctccccagggaagtcctctttggggatggccctcttc 553
Query: 350 cgtctggtggagctatctggaggctgcatcaagattgatggaataagaatcagtgacatc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 cgtctggtggagctatctggaggctgcatcaagattgatggaataagaatcagtgacatc 493
Query: 410 ggcctggccgacctccgaagcaaactggccatcattcct 448
|||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggcctggccgacctccgaagcaaactggccatcattcct 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no414_m04.g1 MSMg01no414_m04.g1 CHROMAT_FILE:
MSMg01no414_m04.g1 PHD_FILE: MSMg01no414_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:32:55 2005
(469 letters)
>mm_chr16_20156011_20156878
Length = 868
Score = 843 bits (436), Expect = 0.0
Identities = 460/468 (98%), Gaps = 1/468 (0%)
Strand = Plus / Plus
Query: 1 atgacacctctttaaaaacaactgaacttaggcccctgaacaagcctgaaggaatgttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgacacctctttaaaaacaactgaacttaggcccctgaacaagcctgaaggaatgttcc 260
Query: 61 acattgctgattttaaagcttctacttctgttgtttttaactccagtgtgggtttctttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acattgctgattttaaagcttctacttctgttgtttttaactccagtgtgggtttctttt 320
Query: 121 ttttatactgtgtactttcattgtttgttttgaaactatgtaatccaggctgacctggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttatactgtgtactttcattgtttgttttgaaactatgtaatccaggctgacctggaa 380
Query: 181 ctgaagattaatttacttaattactttagactctaaagatcttgggattgtcattatgag 240
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 381 ctgaagattaatttacttaattactt-agactccaaagatcttgggattgtcattatgag 439
Query: 241 tcacaatgtttttttctgtgtccttttaaaatcaaatcttgctggggatagtgacactta 300
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcacaatgcctagttctgtgtccttttaaaatcaaatcttgctggggatagtgacactta 499
Query: 301 ccttgggcttgtggccttcctgctcctgcctcctggatgctaggattacaggcatattct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccttgggcttgtggccttcctgctcctgcctcctggatgctaggattacaggcatattct 559
Query: 361 gccaagctgcttatgtgtggtactgagttcatgcatgctgggcagtcagcctcagtttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gccaagctgcttatgtgtggtactgagttcatgcatgctgggcagtcagcctcagtttcc 619
Query: 421 ttagtgcattcacacgtatgtgcccctgccacgcctggctcatctttg 468
|||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 620 ttagtgcattcacaggtatgtgcccctgccacacctggctcatctttg 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 868
Length adjustment: 10
Effective length of query: 459
Effective length of database: 858
Effective search space: 393822
Effective search space used: 393822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
