BAC Information

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BAC

Clone NameMSMg01-414O10
Chromosome16 (Build37)
Map Location 44,217,973 - 44,439,074
singlet/doubletdoublet
Overlap geneGm608, Sidt1, Ccdc52, Wdr52
Upstream geneLOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13
Downstream geneBoc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-414O10.T7 (MSMg01no414_o10.b1)MSMg01-414O10.TJ (MSMg01no414_o10.g1)
ACCAG511087AG511088
length790774
length of high quality
(start - end)
245 (76 - 320)184 (329 - 512)
definitionCHROMAT_FILE: MSMg01no414_o10.b1 PHD_FILE: MSMg01no414_o10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:06 2005CHROMAT_FILE: MSMg01no414_o10.g1 PHD_FILE: MSMg01no414_o10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,438,830 - 44,439,074)(44,217,973 - 44,218,156)
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAACAGACACCGCGG
AATTCCTTTTCATTACCCCTAAGGCCAAAAAAATAAGTCTCAAATACTGT
TTCAACTTACACACACATGTGTACACACATACATACACACATACATCAAG
ATAAAATATGGAACTACCATGAATTCAACTTCCCAAACCACAGATGTTCT
TTGACCTTTGATCTGGGGTAACATCCTGATAGACCCACTGTAAATTGAAA
GTGTCTGATTTTTAAATGTATATATGATACATAAATATATATAAATACAT
AAATATGCCCATAGAATACCTCATTTGATCACATCATGCCCAGAATATCT
ACATTAGCCTACGTAATACTCAAAGCCTTCTTTACAATAGGATGTTGAAT
ATCTCATGAAATTTTCAAAATATTGTACTGACAGTGGAAAACAGAATGGT
CAGGTGGGTATGCTTACACACTGTTACAGAGTTACAGAAAATGTAAGCCA
AACAATCATTAAGTTGTCTACTGTTTCTACAGTGAAAAAAAATCAGACTA
GAAATCTAAGGCCCCATTATTGCTGCTAACCATTTTCTATTTTGAAAGTT
GGCAAAAATATCAGTCTGGCTCCCACCCCTGAAGCTCACGGTAATTCCCC
ACAAAGAATGATTTTATTTCTTTAGGTTCACCGTTGCTTGTTTGTGAAAA
CGTTTTCCCCTATTAAATGCCATAAAATCGTGTGCGCCTAATTCCTCCCC
TACCTTCCACCCTCTTGAACCATAATCTCTCTCTATATTT
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGAAATTCAGTCAGAGATGTGGGCAAGATAGAT
GGCCCCAGAATAAACAGCTCAGCACAGCCATCATGCAGTGATGGACTGCT
GGACAGCCTCCCTGTTGGCCTATCGTCTGTTGCTGTGTCCCAGGCAAAGA
ATGTTAGTATTTCTGCTTCACATTCTTTGGATGTTCTGAATTCTGAATCA
GTATTCCCTGACTCTGGTCCCCAATCTAAGTCAACAGAAGACTGTAGCTC
ACCTTCCCACGAATCTGAAACTTTTTATAACTTGTATTGGCGCCAGCAAA
ACCCAAAGATTCTACTCCTATTTTACAAGAGACATCTCAGGGTACACCAC
CGTGTTCTGTAGCGTTGTCCAATGATATGAAATCCTGTACTTCAGCCAAC
GTGTTGACTCCATCTCCTATCGAATCCCAGAGTTTGGTTTCTCAGGTTTC
TGGTCTGTCATCCACTACGAGCACTTCAAGTACTGACTGTATTTCCGAGG
TAGAAATTTGTGGCACAACCTTGCCCAGTTCAGCATGATTCATTGTACAC
CATGCATAACGCATGGCCTTTTAAAGGGTTTGGACCTACTATGTTGCTGT
CGCAACCTGCTTATTATTTGGACCCTCCAAGGGCATCTCTCCCCATCCTT
ATGGAATATTTCTGATCTTTCCTCCAAAAATTTTTAACAAACGGAATCTA
ATGTTGAATTGTTTCCCACTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no414_o10.b1 MSMg01no414_o10.b1 CHROMAT_FILE:
MSMg01no414_o10.b1 PHD_FILE: MSMg01no414_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:06 2005
         (245 letters)



>mm_chr16_44438617_44439261
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaaaaaataagtctcaaatactgtttcaacttacacacacatgtgtacacacatacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 caaaaaaataagtctcaaatactgtttcaacttacacacacatgtgtacacacatacata 399

                                                                       
Query: 61  cacacatacatcaagataaaatatggaactaccatgaattcaacttcccaaaccacagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cacacatacatcaagataaaatatggaactaccatgaattcaacttcccaaaccacagat 339

                                                                       
Query: 121 gttctttgacctttgatctggggtaacatcctgatagacccactgtaaattgaaagtgtc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 338 gttctttgacctttgatctggggtaacatcctgatagacccactgtaaattgaaagtggc 279

                                                                       
Query: 181 tgatttttaaatgtatatatgatacataaatatatataaatacataaatatgcccataga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tgatttttaaatgtatatatgatacataaatatatataaatacataaatatgcccataga 219

                
Query: 241 atacc 245
           |||||
Sbjct: 218 atacc 214


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no414_o10.g1 MSMg01no414_o10.g1 CHROMAT_FILE:
MSMg01no414_o10.g1 PHD_FILE: MSMg01no414_o10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:06 2005
         (184 letters)



>mm_chr16_44217773_44218356
          Length = 584

 Score =  356 bits (184), Expect = e-103
 Identities = 184/184 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacttgtattggcgccagcaaaacccaaagattctactcctattttacaagagacatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacttgtattggcgccagcaaaacccaaagattctactcctattttacaagagacatctc 260

                                                                       
Query: 61  agggtacaccaccgtgttctgtagcgttgtccaatgatatgaaatcctgtacttcagcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggtacaccaccgtgttctgtagcgttgtccaatgatatgaaatcctgtacttcagcca 320

                                                                       
Query: 121 acgtgttgactccatctcctatcgaatcccagagtttggtttctcaggtttctggtctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acgtgttgactccatctcctatcgaatcccagagtttggtttctcaggtttctggtctgt 380

               
Query: 181 catc 184
           ||||
Sbjct: 381 catc 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)