BAC Information

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BAC

Clone NameMSMg01-415E04
Chromosome16 (Build37)
Map Location 36,072,793 - 36,073,334
singlet/doubletsinglet
Overlap geneCcdc58
Upstream genePtplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik
Downstream geneCsta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415E04.T7 (MSMg01no415_e04.b1)MSMg01-415E04.TJ (MSMg01no415_e04.g1)
ACCAG511361AG511362
length697718
length of high quality
(start - end)
249 (65 - 313)533 (72 - 604)
definitionCHROMAT_FILE: MSMg01no415_e04.b1 PHD_FILE: MSMg01no415_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:35 2005CHROMAT_FILE: MSMg01no415_e04.g1 PHD_FILE: MSMg01no415_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:33:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGGA
ATTCCAAGTTCCTCTGCTTCAAGGATTTTCTAGGACTTTGGAACACTGGT
TGGAGGCTTACCTATGTCAGACTTCAATCTTTAAAGGCACTTAAGACAAT
ACTGAAAGAGAGCACGTGGATCCATACACCAGACTAACGCAGGGATAGGG
TATGAGTATACGGGTTATAAGAATGCCAAGGTTCCAGGAGGTTGAGTTTC
CTTGAAACTCTTTGCCTCGTGAGTGCTTCCAGGCCTCTTGGCCTGCCAAG
CAGACTTCACTGATTTGTACATAGCAAATATGAAAATCAATGGGGAATGA
GATGGAGGGCTATGCCACAATGTCTTCTGAGTGGGACAAGGCCACACTTG
CAAGAACTCACTGACAAGGCCACCATATACAAGAATTCACTGCAGCTGTG
GTCACCTACAAAAGACCAAGCCAACAGGATCAGTCAACTTTCTTGCAGCC
AGTGCTAATTGGAATGGACATCACAGTAGGAAGAGAATGGTTTGAAGATA
CAGCAGGGGAGTGGGAAGGGAGAGGTGGTATAATATACCCAATCCCCATT
GCTTCTATAGAGCGATAGACGGATCCCATACTCACGCCCTATTCTCCTAT
TCTTTATCCCCCAGGGTCTTCGTTTTCCTGTACCCTTTCTGCCTCCG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGAATAACGATCCGGATGTTGATCAATT
CACAATGATGGTTCTGCTATTAAACTAGAGTTGAAGCTAAACAAAAAAAC
AAAAAAACATGACCTTTAAAAGTGTATTTTAAGTAGAGATAGTAAAATTT
GTTAAACATGTCATTTCCCTATCTGTAGTAACCGTAATACTTTGAGTAGC
TTGTAGGTAGTGGTATTCTTGAAGATAACCTCACCAAATTGATTTATTTG
GTAAATAATTAGGCTTAAAGTATTTTTTAACATTTATTTTTATGGGCATC
GGTGTTTTGTGGGCATGTATTTCTGTGCACCACATCTGTGCATTAGCTGC
AGAGGCCAAAAGAGGGCATTGTATCTCTTAGGACTGAAGTTACAAACTTT
TGCAAGTTGCCATATGGGTGCTAGGAATTGAACCTGAGTCCTCTGCAAGA
ACAGACAGATACTCTTATCCACTGAACCATCATCTCTCCAGCCCCTTGGC
CAAAAGACCTAATGAATCTGTGAGTTTAAAAAAAAAAAAAATCAAAAGAT
TTGTTTACCCACAACCAGCCTTAGCATATGTTTTAATTTCGTACATAGGC
ATTACCTTTTGTTCCCCCTCCTTCCCAGACACAACCATAACATACTTGAA
GGTCCTCGCAACATGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_e04.g1 MSMg01no415_e04.g1 CHROMAT_FILE:
MSMg01no415_e04.g1 PHD_FILE: MSMg01no415_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:33:35 2005
         (533 letters)



>mm_chr16_36072601_36073534
          Length = 934

 Score =  982 bits (508), Expect = 0.0
 Identities = 530/542 (97%), Gaps = 9/542 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaataacgatccggatgttgatcaattcacaatgatggttctgctattaaactagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 193 aagaataacgatccggatgttgatcaattcacaatgatggttctgctattaaattagagt 252

                                                                       
Query: 61  tgaagctaaacaaaaaaacaaaaaaaca--------tgacctttaaaagtgtattttaag 112
           ||||||||||||||||||||||||||||        ||||||||||||||||||||||||
Sbjct: 253 tgaagctaaacaaaaaaacaaaaaaacaaaaaaacatgacctttaaaagtgtattttaag 312

                                                                       
Query: 113 tagagatagtaaaatttgttaaacatgtcatttccctatctgtagtaaccgtaatacttt 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tagagatagtaaaatttgttaaacatgtcatttccctatctgtagtaaccgtaatacttt 372

                                                                       
Query: 173 gagtagcttgtaggtagtggtattcttgaagataacctcaccaaattgatttatttggta 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gagtagcttgtaggtagtggtattcttgaagataacctcaccaaattgatttatttggta 432

                                                                       
Query: 233 aataattaggcttaaagtatttttt-aacatttatttttatgggcatcggtgttttgtgg 291
           |||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 433 aataattaggccaaaagtatttttttaacatttatttttatgggcatcggtgttttgtgg 492

                                                                       
Query: 292 gcatgtatttctgtgcaccacatctgtgcattagctgcagaggccaaaagagggcattgt 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gcatgtatttctgtgcaccacatctgtgcattagctgcagaggccaaaagagggcattgt 552

                                                                       
Query: 352 atctcttaggactgaagttacaaacttttgcaagttgccatatgggtgctaggaattgaa 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atctcttaggactgaagttacaaacttttgcaagttgccatatgggtgctaggaattgaa 612

                                                                       
Query: 412 cctgagtcctctgcaagaacagacagatactcttatccactgaaccatcatctctccagc 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cctgagtcctctgcaagaacagacagatactcttatccactgaaccatcatctctccagc 672

                                                                       
Query: 472 cccttggccaaaagacctaatgaatctgtgagtttaaaaaaaaaaaaaatcaaaagattt 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cccttggccaaaagacctaatgaatctgtgagtttaaaaaaaaaaaaaatcaaaagattt 732

             
Query: 532 gt 533
           ||
Sbjct: 733 gt 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 934
Length adjustment: 10
Effective length of query: 523
Effective length of database: 924
Effective search space:   483252
Effective search space used:   483252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)