Query= MSMg01no417_p04.b1 MSMg01no417_p04.b1 CHROMAT_FILE:
MSMg01no417_p04.b1 PHD_FILE: MSMg01no417_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:00 2005
(536 letters)
>mm_chr16_3762452_3763388
Length = 937
Score = 1006 bits (520), Expect = 0.0
Identities = 530/534 (99%), Gaps = 3/534 (0%)
Strand = Plus / Plus
Query: 5 gaattccatatctctttatttttgcctaacttaaaaataaatataagaaaatcaaaagtc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatatctctttatttttgcctaacttaaaaataaatataagaaaatcaaaagtc 264
Query: 65 acacacacaca--tacacaccccaactactaagaaacctcacagggaactgattccaaga 122
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acacacacacacatacacaccccaactactaagaaacctcacagggaactgattccaaga 324
Query: 123 gctggtatatacttaactcttaattacaagcagactattactggtacaacctgaagagta 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gctggtatatacttaactcttaattacaagcagactattactggtacaacctgaagagtg 384
Query: 183 tcaaatctctactgaataaaacaagacctgcctgtgttttataaatgagctcaggatatt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaaatctctactgaataaaacaagacctgcctgtgttttataaatgagctcaggatatt 444
Query: 243 gtgggaaatgagaactctcctgtggttcttctctacccacagccaggcctgatccaagag 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 gtgggaaatgagaactctcctgtggttcttctctacccacagccaggcctgatc-aagag 503
Query: 303 cagacaagcagcaaagcccagacagtggcacctgagctcttgtgagctccatctctaggt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagacaagcagcaaagcccagacagtggcacctgagctcttgtgagctccatctctaggt 563
Query: 363 gagctgtgctttctccatgtgttgcccgcctttctctgctgcccaggattcggatgccct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagctgtgctttctccatgtgttgcccgcctttctctgctgcccaggattcggatgccct 623
Query: 423 gggatgggctcagaactatattaaaccagattactgtaacctgggaaccgtgtacctcct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gggatgggctcagaactatattaaaccagattactgtaacctgggaaccgtgtacctcct 683
Query: 483 gggctacttccttactcctttctgccttgtcgcttcttaaggcactctcattca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gggctacttccttactcctttctgccttgtcgcttcttaaggcactctcattca 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 937
Length adjustment: 10
Effective length of query: 526
Effective length of database: 927
Effective search space: 487602
Effective search space used: 487602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_p04.g1 MSMg01no417_p04.g1 CHROMAT_FILE:
MSMg01no417_p04.g1 PHD_FILE: MSMg01no417_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:00 2005
(476 letters)
>mm_chr16_3912418_3913293
Length = 876
Score = 899 bits (465), Expect = 0.0
Identities = 474/477 (99%), Gaps = 1/477 (0%)
Strand = Plus / Minus
Query: 1 aggtgtggtggtgcataactatgatctcagcactcagaaaacagaggcaggcagatcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 aggtgtggtggtgcataactatgatctcagcactcagaaaacagaggcaggcagatcttg 755
Query: 61 gtgagttccagggcagcctggtctaaatagtgaaaccctgcccaaacaaacaaacaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gtgagttccagggcagcctggtctaaatagtgaaaccctgcccaaacaaacaaacaaaca 695
Query: 121 aaagc-aaaaaaaaaaaaaagtgtccattaaagagaaagtggatgattgactgttgctaa 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aaagcaaaaaaaaaaaaaaagtgtccattaaagagaaagtggatgattgactgttgctaa 635
Query: 180 ggtgaggttctccaggctccatccaaagaaatatgattaagcagaaacttcaaaagcaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ggtgaggttctccaggctccatccaaagaaatatgattaagcagaaacttcaaaagcaaa 575
Query: 240 caaaataaccagggagcaaattccaacccacacctgagattcagtgtcttggagcacagg 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 574 caaaataaccagggagcaaattccaacccacacctgagattccgtgtcttggagcacagg 515
Query: 300 gtggctcagtgggtgaatgggtcgcctaccatgcctggcactcaggattcacagagtgca 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 514 gtggctcagtgggtgaatgggtcgcctaccaggcctggcactcaggattcacagagtgca 455
Query: 360 agaggagaaccaactacaagctgtccttgaaccttcacgtgtatgctgtagctagcatta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agaggagaaccaactacaagctgtccttgaaccttcacgtgtatgctgtagctagcatta 395
Query: 420 atccatacatgtatgtgtatacacacatgcctagagggtaaaggggcttgctctata 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atccatacatgtatgtgtatacacacatgcctagagggtaaaggggcttgctctata 338
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
