BAC Information

Click to search

BAC

Clone NameMSMg01-418N02
Chromosome16 (Build37)
Map Location 5,970,867 - 5,971,394
singlet/doubletsinglet
Overlap geneA2bp1
Upstream gene4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik, LOC100042436
Downstream geneLOC100042445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418N02.T7 (MSMg01no418_n02.b1)MSMg01-418N02.TJ (MSMg01no418_n02.g1)
ACCAG514064AG514065
length771758
length of high quality
(start - end)
---528 (76 - 603)
definitionCHROMAT_FILE: MSMg01no418_n02.b1 PHD_FILE: MSMg01no418_n02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:07 2005CHROMAT_FILE: MSMg01no418_n02.g1 PHD_FILE: MSMg01no418_n02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGG
AATTCTCTCCTTCTCCGTAACTCCCTCTCTCCCCCTCACTCCCTTCAACC
CCCTCTGTCTTTCTCTCACCCTCCCTCCACCCCTCTCACCTTATCTCTCT
CTCTCTCTCTCTCTCTCTCTCTGTCTCACTCTCTCTGTCTCAAAGAGAGG
GAGAATGAAAGAAAGTGAGTAGGTGGAGAAAAAAGACACGAGGAGGCACG
AGAGAATATAATCTAAGTAGAAGGAAGAGAGTTGGTTCAAGATGAGAAAG
CAAGAGAAAGAAATATAAAAAGTGGAGGAAGGGGGGAAGATAGATTATAT
ATACAGAGAGGAAAAAAGGAGAAGAGAAAGGGAATGAAAAGATAAATATA
GAAGAAAATGAGAATAAAAACGAGAAAAGAAAGAGTGAAGGAAGAGAAGG
AAAAAGAGAGGAAAAAGAAAAGTAGAAGGAAAAAAAAAGGAAAAAGAGCA
AGAAGGAAAAAAAAAAAATGAAATAAAAGGGAAAGAAAGAGAAGAAAAGG
GAAAATGAGCAAAAAAAAGAGAACAGAGAAAAAGGATAAAGTAAAAAAAA
GTGAGAAAAAGAACTAAAAAAGAAAGAAAAGAAGAAAAAGGAAAAAAGAA
AGGAAAAAAAACAGAGGAAGAAAAGAGAATATTAGAATGGAAAAGAGAAA
AAGAAAAGGAAAAATTAAAGAAGATGAAAAAAAAAAAAGCGAAGGAGAAG
AGAAAAAAGAAAAAAGAAAGN
CGATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGTGCAGATGGTTTCAATTA
CAGTCAGAACTCTGACTCTGAACTAGCTATACTGCTGTTATACTAGTGGG
TACATGTTGTCTGGCAGGTGAGAGGAAGAAAGTCACTGGGAGCAAACATG
GGACAGAAGAAGAAGGGCAGAGTGAATGTAATCAAAATTCACAATGGGCT
TGTATGAAAATGTCATAATGTAAACAACAGGGTATAATTTATATGTGCTA
GCAAATAAAAGCTTTAAAAGTTTCTGTTTAATGAAATAGGTTTGGTTTCT
GTGTCTTATGACTCAATCCTTGATCCAACTTTCATATAACTCTCAGGAAG
CCAGTGCTCTGCTCTCCTGAACTATGACATTACCCTAACCCACCAAGGTT
GTTTTAGGAATGAGAATGGAACACAGATAAGACCTAAATGTCCTTTTCTA
GAGACACATTATCTTAGTTTGGGTTTTGCTGCTGTGAACAGACACCATGA
CCAAGGCAACTCTTATAAAGAACAGCATTTAATTGGGGCTGGCTTACAGG
GTCAGAGGTTCAGTACTTCATTATCAAGGTGGGAGCATAGCAGCATTCAT
GCCAGTATGGTGCTAGAGGAGCTGCTAAGAGAAAACTGACTTCCCAGCTG
CTTGGAAGAAAGGTTTAAAGCTCATGGCCAAAGTGACAACCTTTCACAGT
AAGTGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_n02.g1 MSMg01no418_n02.g1 CHROMAT_FILE:
MSMg01no418_n02.g1 PHD_FILE: MSMg01no418_n02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:07 2005
         (528 letters)



>mm_chr16_5970667_5971594
          Length = 928

 Score = 1021 bits (528), Expect = 0.0
 Identities = 528/528 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccagtgcagatggtttcaattacagtcagaactctgactctgaactagctatactgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttccagtgcagatggtttcaattacagtcagaactctgactctgaactagctatactgc 260

                                                                       
Query: 61  tgttatactagtgggtacatgttgtctggcaggtgagaggaagaaagtcactgggagcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttatactagtgggtacatgttgtctggcaggtgagaggaagaaagtcactgggagcaa 320

                                                                       
Query: 121 acatgggacagaagaagaagggcagagtgaatgtaatcaaaattcacaatgggcttgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatgggacagaagaagaagggcagagtgaatgtaatcaaaattcacaatgggcttgtat 380

                                                                       
Query: 181 gaaaatgtcataatgtaaacaacagggtataatttatatgtgctagcaaataaaagcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaaatgtcataatgtaaacaacagggtataatttatatgtgctagcaaataaaagcttt 440

                                                                       
Query: 241 aaaagtttctgtttaatgaaataggtttggtttctgtgtcttatgactcaatccttgatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaagtttctgtttaatgaaataggtttggtttctgtgtcttatgactcaatccttgatc 500

                                                                       
Query: 301 caactttcatataactctcaggaagccagtgctctgctctcctgaactatgacattaccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caactttcatataactctcaggaagccagtgctctgctctcctgaactatgacattaccc 560

                                                                       
Query: 361 taacccaccaaggttgttttaggaatgagaatggaacacagataagacctaaatgtcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taacccaccaaggttgttttaggaatgagaatggaacacagataagacctaaatgtcctt 620

                                                                       
Query: 421 ttctagagacacattatcttagtttgggttttgctgctgtgaacagacaccatgaccaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctagagacacattatcttagtttgggttttgctgctgtgaacagacaccatgaccaag 680

                                                           
Query: 481 gcaactcttataaagaacagcatttaattggggctggcttacagggtc 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaactcttataaagaacagcatttaattggggctggcttacagggtc 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)