BAC Information

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BAC

Clone NameMSMg01-419A12
Chromosome16 (Build37)
Map Location 9,581,860 - 9,582,257
singlet/doubletsinglet
Overlap geneGrin2a
Upstream geneAbat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
Downstream geneLOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419A12.T7 (MSMg01no419_a12.b1)MSMg01-419A12.TJ (MSMg01no419_a12.g1)
ACCAG514228AG514229
length732778
length of high quality
(start - end)
45 (372 - 416)397 (69 - 465)
definitionCHROMAT_FILE: MSMg01no419_a12.b1 PHD_FILE: MSMg01no419_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:24 2005CHROMAT_FILE: MSMg01no419_a12.g1 PHD_FILE: MSMg01no419_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTCTCTCTATTTGTGCCGCGANANNGAGCCTACATTCAGACAGGCGCGG
GANNCNGANATCTTCTCCGAGCCCTATATACAGAAGAATGCGTCAGGGAC
TTGAAAAGGAAGAGTAGTGTAAAGAACTTGGGGCTTTGAGACTAAAAGCC
CGGGTCTCACATTACAGTTCCTACAACCCACATTTTAGAATCTGAGAAAC
ACAGAAATCTCGGGCCCCTCTCAGAGCTCCTTATAGATGGGCACCCCTCA
ACTATATCTTGAGTATTGGGAGAAAAGTCCGAATTCCTCCGAAATTCCAG
GGACCAGGGGGAATCCTTTTTTTTTTTCTAAAGGTGATACAATATTCAGA
CAAAAGGCTATTTACCGGAATAAAGGAGTTATTTTTGGTTATAATTCTAT
CATTGTTGTGAAGTCACAACAGAAGAAGCATGAAGCTAACTAGTCTTATC
ACATCCATAGACTAGAACAGGGAGAAATAAATATAATGTACACTAAGCTC
TCAGCCATCTTTCTTCACTCTTAGGCTGTCTAAGGTCAAAATCTAGGAAT
GAAGCCTCCCACTTTCAGGCTGAATTTTCCCACCTCAGTTAACGCAATCC
CCAACAGAAATGCCCTAACCCAACCTGATCCCGGTAATCCCCCCTTTGAT
ATTTTCCTTGTCCCGATTCTAGACTGCTCCCCGCGTTTAACTAAATCCCA
CCATTCACGATGTAACTTGTTACTCTCGCCTT
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATTCAGGAGCCTTGAGAAGCAAAGCAGGCTGA
CTAGAAGTTTTGTATCTCACCAGGTACACTAGGAGGATACATTACTTCTA
TAAGTTTGAAAGGTATTCAAAACCTGTGAGCAAGAGGGTGGGGAGCACAA
GTTAACTAACAGGAGCCAAGGAACTTCTAGCAAGGGGATTGTCGGTCTCC
ATAGTGGACTTACTAACCAGAAGGCAAATGTGATTTCTGGACAAACTTTC
TATAGCAATGAGTTAATGCTTTGCTTTGTGGCTTTGACAAGGTGGGCATT
GTGAGTTCAAGCAGGTTTGAAAGGAGAACATACAAAGGCAGGAAGGAAAG
GGGAAAGGAAGAAGAAAGGAAAAGGAAAGAAAGGGAGGGGAAAGTGATAC
AATTAGGGAAGGGAAAAAAGGAGGAAGTAACATTTTTCTCTCCCGTATTT
TCCTTTTTCCTTCTTCTCCCTTCTTCTTCCCCTTTCTTTTTTTTTTCCAC
TTTGTTCTCCTTGTTCCCCTCTTAACCCCCCTTTTCCTCCCTTTATCCTT
TTTTTTATTTCCCCTTTTTCCACCTTTTCCTTTACTTTCTATATTTCTAC
AAACCACCCCACCCCCCTCCCCTTCTTTTTTTTTTTTTATTCCCCCCCCT
GTACCGTTCTAATCCTCCTTTCCAACTTTATAACTTCTCTTTGCTTTTCA
ATCCCCCACTTTCTTCTTCTCCTCAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_a12.g1 MSMg01no419_a12.g1 CHROMAT_FILE:
MSMg01no419_a12.g1 PHD_FILE: MSMg01no419_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:24 2005
         (397 letters)



>mm_chr16_9581733_9582530
          Length = 798

 Score =  685 bits (354), Expect = 0.0
 Identities = 387/398 (97%), Gaps = 1/398 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcaggagccttgagaagcaaagcaggctgactagaagttttgtatctcaccaggtaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 attcaggagccttgagaagcaaagcaggctgactagaagttttgtatctcaccaggtaca 466

                                                                       
Query: 61  ctaggaggatacattacttctataagtttgaaaggtattcaaaacctgtgagcaagaggg 120
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctaggaaaatacattacttctataagtttgaaaggtattcaaaacctgtgagcaagaggg 406

                                                                       
Query: 121 tggggagcacaagttaactaacaggagccaaggaacttctagcaaggggattgtcggtct 180
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 405 cggggagcacaagtaaactaacaggagccaaggaacttctagcaaggggattgtcgggct 346

                                                                       
Query: 181 ccatagtggacttactaaccagaaggcaaatgtgatttctggacaaactttctatagcaa 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ccacagtggacttactaaccagaaggcaaatgtgatttctggacaaactttctatagcaa 286

                                                                       
Query: 241 tgagtta-atgctttgctttgtggctttgacaaggtgggcattgtgagttcaagcaggtt 299
           ||||| | || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tgagtaacatacattgctttgtggctttgacaaggtgggcattgtgagttcaagcaggtt 226

                                                                       
Query: 300 tgaaaggagaacatacaaaggcaggaaggaaaggggaaaggaagaagaaaggaaaaggaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tgaaaggagaacatacaaaggcaggaaggaaaggggaaaggaagaagaaaggaaaaggaa 166

                                                 
Query: 360 agaaagggaggggaaagtgatacaattagggaagggaa 397
           |||||||||||||||||||||| |||||||||||||||
Sbjct: 165 agaaagggaggggaaagtgatagaattagggaagggaa 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 798
Length adjustment: 9
Effective length of query: 388
Effective length of database: 789
Effective search space:   306132
Effective search space used:   306132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)