BAC Information

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BAC

Clone NameMSMg01-419E10
Chromosome16 (Build37)
Map Location 40,487,171 - 40,686,618
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419E10.T7 (MSMg01no419_e10.b1)MSMg01-419E10.TJ (MSMg01no419_e10.g1)
ACCAG514416AG514417
length743749
length of high quality
(start - end)
158 (321 - 478)329 (322 - 650)
definitionCHROMAT_FILE: MSMg01no419_e10.b1 PHD_FILE: MSMg01no419_e10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:45 2005CHROMAT_FILE: MSMg01no419_e10.g1 PHD_FILE: MSMg01no419_e10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,487,171 - 40,487,328)(40,686,290 - 40,686,618)
sequence
CCCCTTTCTTTATTTGTGGGGGGAAAAGAGNANNAATCTCACAGGGCGGG
GGAANNATTTTTCACCTACTATAANANAGGAGGGGTGCGGAGTGCAAGAA
AACATTTTCTTTTCCTTTGAGATAGGGCTTTTCCAGAGGGAATATTTTAC
CGGAATATATTTTAAAAATACCCCTATAAAAATTAAGAACAAATTAAAAA
AAAAGGGAATCCCATTCTTTATTTGTCATAAAGGTACCATGTTATCTGAG
AAATGGTACATCACCAAGAGAAAATCTAAATTCCCTTATTTAATCCTAGT
TTTCCATGGCATATTTTGTCTTGAGAAATACACACATGGCTGATATGAGG
AAGATGACTTCTATTGGTGGATCCAATAAAAGTGTGCATGGAAATCACAG
TTGCATAAAGGAGGTTATGGTTTTATTTAATCTCATTTACTGCTGTTATA
TCTTGCCTTTCCCAGCGGACTTCTTTGTTTTGATTACTCACTGGCTATAT
ACTACCTTGAAAAAACAACTCTTTTTTTCCCCATCATTAATTAATCACTA
CCCTTTTATAAAAGATTTGAAATGGGTTGGTTCCTTTTTTATTGCTGCCA
GAAGTACGGGGAACAAAACATCTTGCAAAAAAAAAAAACTGTGTTAAAAA
GTTATGGGTTTTTGCCTTCCCAAAAATATATGTCCGGTTCCCCCTTGGGA
AAAAAATAATAATATCTACTCTCTCTTGTTCTTTTCCCCGCTT
CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTAGTCAAAGGTTCCTGTTTATCTACTAAATC
ATATAGCTCTAGGTCTGTTACAACTACAGATCAGTCTCCCAGACAGAATA
TGGCAATTAAACGCCTTAGTTTTGTTACTTTATATTCCTTTCATGATAAT
TTATTTTCCAATTATATTTAAAATATAAACTCCAAAAACTCTTATCTCTT
TATAATTTAAGTGTCCCTTTGAGCAAGGTATTGGGCAGAAGGTGGTGGCA
ATTAGTATAGAAGATTTCTGAGGGAATTAGTATTTTAATATTTCCTTAAA
TAAATCATAGTGGATACCTCTGTCCACTGCTTTAACATGAGCAGTTAAGC
TGGTATAAGATGACCATTCTATTAAAGAGTCTGCAAAGCTTTAGACAAAT
GAGTTTAATACTTAAAATGTTCAAATTTTTTATTTCAAAATGTTGCCATA
TTCATTGATTGATTTATATATTCTGTTTTTATCAGTGGATGATCCTTCCA
CTAATGTCATTCATCTGGAAATGAACTGGTTTACTTATTAGTTTTGAATG
AGCAGATATAAACATAGATCACAGAAATCTCTCTCTCTCTCTCTCTCTCT
CTGTGTTGTGTGTGTGNGGGTGTGCCTTCTCCCCCTTTCCCTTNTTTTNC
TCTTCTCTCTTTTTTTTTTTTCTTTTTCTCTCGCTTTTTTTCTTTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_e10.b1 MSMg01no419_e10.b1 CHROMAT_FILE:
MSMg01no419_e10.b1 PHD_FILE: MSMg01no419_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:45 2005
         (158 letters)



>mm_chr16_40486971_40487528
          Length = 558

 Score =  298 bits (154), Expect = 1e-85
 Identities = 157/158 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagaaatacacacatggctgatatgaggaagatgacttctattggtggatccaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgagaaatacacacatggctgatatgaggaagatgacttctattggtggatccaataaa 260

                                                                       
Query: 61  agtgtgcatggaaatcacagttgcataaaggaggttatggttttatttaatctcatttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgtgcatggaaatcacagttgcataaaggaggttatggttttatttaatctcatttac 320

                                                 
Query: 121 tgctgttatatcttgcctttcccagcggacttctttgt 158
           || |||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttgttatatcttgcctttcccagcggacttctttgt 358


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 558
Length adjustment: 8
Effective length of query: 150
Effective length of database: 550
Effective search space:    82500
Effective search space used:    82500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no419_e10.g1 MSMg01no419_e10.g1 CHROMAT_FILE:
MSMg01no419_e10.g1 PHD_FILE: MSMg01no419_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:45 2005
         (329 letters)



>mm_chr16_40686114_40686842
          Length = 729

 Score =  613 bits (317), Expect = e-180
 Identities = 326/329 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggaattagtattttaatatttccttaaataaatcatagtggatacctctgtccactgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggaattagtattttaatatttccttaaataaatcatagtggatacctctgtccactgct 446

                                                                       
Query: 61  ttaacatgagcagttaagctggtataagatgaccattctattaaagagtctgcaaagctt 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaatatgagcagttaagctggtataagatgaccattctattaaagagtctgcaaagctt 386

                                                                       
Query: 121 tagacaaatgagtttaatacttaaaatgttcaaattttttatttcaaaatgttgccatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tagacaaatgagtttaatacttaaaatgttcaaattttttatttcaaaatgttgccatat 326

                                                                       
Query: 181 tcattgattgatttatatattctgtttttatcagtggatgatccttccactaatgtcatt 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcatcgattgatttatatattctgtttttatcagtggatgatccttccactaatgtcatt 266

                                                                       
Query: 241 catctggaaatgaactggtttacttattagttttgaatgagcagatataaacatagatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catctggaaatgaactggtttacttattagttttgaatgagcagatataaacatagatca 206

                                        
Query: 301 cagaaatctctctctctctctctctctct 329
           ||||| |||||||||||||||||||||||
Sbjct: 205 cagaactctctctctctctctctctctct 177


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)