BAC Information

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BAC

Clone NameMSMg01-422M11
Chromosome16 (Build37)
Map Location 88,845,276 - 88,845,517
singlet/doubletsinglet
Overlap genenone
Upstream geneGrik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15
Downstream geneKrtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422M11.T7 (MSMg01no422_m11.b1)MSMg01-422M11.TJ (MSMg01no422_m11.g1)
ACCAG517088AG517089
length822726
length of high quality
(start - end)
137 (63 - 199)242 (66 - 307)
definitionCHROMAT_FILE: MSMg01no422_m11.b1 PHD_FILE: MSMg01no422_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:18 2005CHROMAT_FILE: MSMg01no422_m11.g1 PHD_FILE: MSMg01no422_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXATGCGTGAGCATCCGCGGAATTCTCAAC
CCTTACTTTATAAAATTCTCCCCAAGGCTGACATATCTTTACTTTGGATG
CATACTAGTAGGCTTCAATTTGTATATAATATTATATTAATTGATGAAAT
GTATATATATATATATATATAGAGAGAGAGAGAGATTTTATTTATGTTAT
ACACAATATACCACCACCCGCACCTTCAACTTCTTCATTTTTTTTTTTTC
AGCCCCCTTTTCCCATATTTCTCTGTCCTAACGATGACCCCCCCCCACAC
CGGCAAATTTCCCCTCACTTTCCAAGACAAACCCCCGACCCCCCGCTGCA
TTTTTTTTCTCCCCCCCTCCCCCCCCTGGGTGTGTTTCTTCTCTTTACTC
TCCCAATACTTCTTCCTTCCTTCTTCTCTTACGTCTCTCCCGCTTCCCTT
TCTCCTCCCACTCCTTCGTTCTCTTCCCCACATCCCTCTTTCCCTCCGTT
TGTTTCTCTTCTTCTCCGTCATTCCTTCTATTCTTCTCTCTCTTCCCTCC
TTTCCACCGCCCATCTCCACCCCGCTTTGGCCTTTCCCTCTTCCTTCCAT
CTGTTCTCTTCATCCTTCCCCCTCCCATCTCCTCTCCCTCCTCCTCTGTT
TTTTCTTCCTCTTTCTTCACCCCGCTCTTTCTTCCTTCTCTCCTTTTAAT
CCCTTCCCTTTCTTTTTTTCTCCACTATTTCACTACTCATACCGATATTT
TTTTCTTTTTTTTTTCTCACCATCGACCACACCCTTTCCCTCCCCCCCAT
CTTGTCCTCCCTCTTTTCTTCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAATGCTGAACCAATTTTATTTGTTATAAACTAATTG
CTGTTATTCTGAGTTTTTTTTTTCACCTTTATGGCTTCTCCTTACACATT
GTTTTATGAACGAGGGGTAAGATATCCTGGGTTCATCTATGCTACATCTA
ATTATGAAGAGATCTGATAAGGTCAGGAATGCTGCAGAGTTTTTTTTCTT
AAAGAATAGAAGGTGGGTTTGGTGGCAGAGAACTTGGTCTCCCAACTTAC
TAGGTTAATANATGCTTTTTCCCCTGGAGACTGAGTTTTAGAAATAGCTT
TAGTAGATCTGAAATATAGAGAGAAATGTGATATGATTGTCTTTCAACAG
CCTGATTCACAAGATAGGTTGTGTCACTTATTGATGATAGTCTTCAGTAT
TTCCAATCAAGTGCATTTCTATTGATAATCCAGACATGCGTCAGTCATGA
GCTTATTTGCTTTTATGAAAACAACTACAGGCGTGATTGCAGATTTCTAA
CAAACAGTTGTATTTTTAATTTTCCTTTTTCCTTGGCACGTATTTGGAGC
GATTCCACCCGCATTGTTTTTGTTTCTCCAATCACATGACTTTGATTTTT
TTTTTTTCCAACTCTTATCTCTTCATGCTTTTATTAGTCGTGCATATATG
TTGCGCGTTATCTGCGTGGTCATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_m11.g1 MSMg01no422_m11.g1 CHROMAT_FILE:
MSMg01no422_m11.g1 PHD_FILE: MSMg01no422_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:18 2005
         (242 letters)



>mm_chr16_88845076_88845717
          Length = 642

 Score =  424 bits (219), Expect = e-123
 Identities = 237/243 (97%), Gaps = 2/243 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgctgaaccaattttatttgttataaactaattgctgttattctgagttttttttttca 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 442 atgctgaaccaattttatttgttataaactaattgctgttattctgag-tttttttttca 384

                                                                       
Query: 61  cctttatggcttctccttacacattgttttatgaacgaggggtaagatatcctgggttca 120
           |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 383 cctttatggcttctccttacacattgttttttgaatgaggggtaagatatcctgggttca 324

                                                                       
Query: 121 tctatgctacatctaattatgaagagatctgataaggtcaggaatgctgcagagtttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 323 tctatgctacatctaattatgaagagatctgataaggtcaggaatgctgcagattttttt 264

                                                                       
Query: 181 tt-cttaaagaatagaaggtgggtttggtggcagagaacttggtctcccaacttactagg 239
           || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttcttaaagaatagaaggagggtttggtggcagagaacttggtctcccaacttactagg 204

              
Query: 240 tta 242
           |||
Sbjct: 203 tta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)