BAC Information

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BAC

Clone NameMSMg01-423A12
Chromosome16 (Build37)
Map Location 43,248,965 - 43,249,516
singlet/doubletsinglet
Overlap genenone
Upstream geneGap43, BC002163
Downstream geneLOC667484, Zbtb20, LOC100043314, Drd3, Qtrtd1, 2610015P09Rik, Zdhhc23, Gramd1c, Atp6v1a, Nat13, Gm608, Sidt1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423A12.T7 (MSMg01no423_a12.b1)MSMg01-423A12.TJ (MSMg01no423_a12.g1)
ACCAG517282AG517283
length730940
length of high quality
(start - end)		570 (34 - 603)---
definitionCHROMAT_FILE: MSMg01no423_a12.b1 PHD_FILE: MSMg01no423_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:37 2005CHROMAT_FILE: MSMg01no423_a12.g1 PHD_FILE: MSMg01no423_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTACTCTC
CGGTAAAGCTGACTCCTTCACTACTACTTTTCTTTATCATCTTCTCTGCC
ACTGTAGTAATGAGAAGTGTGATGTGAGGAACATACATAATGTTCACATT
TTACATATGTAAGGATCAGGACAATTGTACCTTTTCAAAGAAGAATCTCT
ATTGATGTAAATATCCCTTAGCACAGAACTATAGATGCCAATCTTTTGTT
AAAAGCTACTGTTATTTTTTATAACAAAATGATGAAAATTTATTTATTAA
AAGGTTCATTGTCATTATCATGGAGGGTGCGTGGTTGGTACCTTAACAGT
TTGATTGAATTAAAATCAAGTTCAAGCTGGGGTTTCTTTTGCAGCTCTAT
TCCTTGCTTTCTCTTTGACTCCAAGCTAATTGCATAACCTCTGGTTGACT
TGTGCCTCGTCTACACATTCAAAGTAAAAATCAGAAATGAGGTTATTATC
TCACTAATGTAGGCTGGAACATTATTTCTCTAAATATTTCTGGAACTGCA
TTTAAGATTTCTGGTCATAAAAAATCCAGAGTCTTATAAACATTCTCCTG
TAGCCTTAGACATCTGCCCTATGGGAGAATATACGGAAGGTCACACACAG
ATCGGAATTCATGCACCAATCAAACTGGGTTTGATGTTCCCTTCCTACCT
ACACTAAACTTCTTACTCTGAATCTAGAAT

AAAGGAAAGGAGGNNNNCATTTCGTACCCAGCTNGGNGNNNNNNNNNATG
GCGGCACCAGCAGGGGGNNNNNGGNNNGNNNNNNNNNNNGGGGGGNNGGG
GGGGTTTTGCCCCGCAAGGAAGGGGCGTGGAGCGGCGCGCAGACCCAAAC
AAGACCTGTGAGGGGGGCGGGGGGACCAACCCCAGCGTACGGAGGAGAAG
AGTCGGAGATTTGCGCACAACCACCGAGAAGAAAACAAAACAGCACGCAA
AGGACGATTTTTTTTAACGAGGACCACCCGCGGCGGCCGCGCACGAGCGC
CCGCGACAGCACCAACACCCGCAAAAAAGACAACACCGATTGTGGGTCGC
TTTATAGCAACCCGCCCAGCGGCAACGCCGAAGACGGCACGTATATTTTA
TCACCCCCCACCCACCGGCGCGGAGAGAGGGGCGCCCGCAACCAGCGGAA
GGGCGAGAGGCAGGGCGAAACTGTCCCAGAAGCAACCGGCAGCGCGGAGG
AGCACCGGAGATTCGATCCGCCGACCCGGACGCCGATTACCAGCCCCAGA
CGGACAGGAAAAGACACGAGCGGCGGAGCGCACGAAGCGGCCGCCGCCGC
GACGGGTGAACACCGAAGCAGAGCCGCGGACGCGCGAGGGGGGGAAAGCG
AAGGGAGGCGAAGCACGGAGGGCCGGAAGCCGCGCGAACGGCGGCAGCAC
ATGAGGGAGACGGCCAGGGCCGCCCGGCAGCGCGTCGTGATGGACGAGTG
AAGCGCCGCGACCACGAGACGCGTGCAACCCACCACAAGAAGGGAACAAG
GAGCTGTGGATTATAGGCGCGGGGGANACCAGGCGGCGGTGGGCGGCGAG
GCGGGACAAACGGCAGAGGGCACGGCAACACGGACAGACACGCCGATCAC
CGCCGTGGACGGAACGCGGCAAGCAGCGACCACCGCGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_a12.b1 MSMg01no423_a12.b1 CHROMAT_FILE:
MSMg01no423_a12.b1 PHD_FILE: MSMg01no423_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:37 2005
         (570 letters)



>mm_chr16_43248747_43249716
          Length = 970

 Score = 1067 bits (552), Expect = 0.0
 Identities = 552/552 (100%)
 Strand = Plus / Plus

                                                                       
Query: 19  ggtaaagctgactccttcactactacttttctttatcatcttctctgccactgtagtaat 78
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ggtaaagctgactccttcactactacttttctttatcatcttctctgccactgtagtaat 278

                                                                       
Query: 79  gagaagtgtgatgtgaggaacatacataatgttcacattttacatatgtaaggatcagga 138
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gagaagtgtgatgtgaggaacatacataatgttcacattttacatatgtaaggatcagga 338

                                                                       
Query: 139 caattgtaccttttcaaagaagaatctctattgatgtaaatatcccttagcacagaacta 198
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 caattgtaccttttcaaagaagaatctctattgatgtaaatatcccttagcacagaacta 398

                                                                       
Query: 199 tagatgccaatcttttgttaaaagctactgttattttttataacaaaatgatgaaaattt 258
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tagatgccaatcttttgttaaaagctactgttattttttataacaaaatgatgaaaattt 458

                                                                       
Query: 259 atttattaaaaggttcattgtcattatcatggagggtgcgtggttggtaccttaacagtt 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 atttattaaaaggttcattgtcattatcatggagggtgcgtggttggtaccttaacagtt 518

                                                                       
Query: 319 tgattgaattaaaatcaagttcaagctggggtttcttttgcagctctattccttgctttc 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgattgaattaaaatcaagttcaagctggggtttcttttgcagctctattccttgctttc 578

                                                                       
Query: 379 tctttgactccaagctaattgcataacctctggttgacttgtgcctcgtctacacattca 438
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tctttgactccaagctaattgcataacctctggttgacttgtgcctcgtctacacattca 638

                                                                       
Query: 439 aagtaaaaatcagaaatgaggttattatctcactaatgtaggctggaacattatttctct 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aagtaaaaatcagaaatgaggttattatctcactaatgtaggctggaacattatttctct 698

                                                                       
Query: 499 aaatatttctggaactgcatttaagatttctggtcataaaaaatccagagtcttataaac 558
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 aaatatttctggaactgcatttaagatttctggtcataaaaaatccagagtcttataaac 758

                       
Query: 559 attctcctgtag 570
           ||||||||||||
Sbjct: 759 attctcctgtag 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space:   537600
Effective search space used:   537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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