GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATTCAGTTTC
CGAGAAGGAGCTTTGCATAGAGACATACAAAGAAACTTCTTCTACCTTAT
GAATGGATGTTTACTAGTGTTTATATTTTGGAATGCATTAAAGATCGAGG
AGAGCCTACATCCCAAACTAAACAGGAGCATGCATGAATGTAGACATGTG
TATACACACATAGGTACACACACACAGGTATACACACACACACACAGATA
CACACACATAGGTATACGCACACACACACACACACACACACACACACACA
CACACACACACTCTCACACACATACACACAAGGGCCCAACCATCCATTTG
AGTTATGATACTCTGAGCAGATTTTAATTTCCTTTTCACAAAATGGAGGC
TACTATTTCCCTTTTAGAGTTACAATGGGCAAGAGGCACACATCTCTAGC
TCCCGAAGTGCCTCACTCAAATTCCTTTTACAAATAGCAGTGGGTTTCCT
ACTGACATGAGTTTAAAAGCCTTTCAATTGAAATCGTTGAAGTGACAAGA
TAAACGGGGACCTTCATCTTTAAGCTTTGGGAACACACAGGGGAATGAGT
GGCTGTGAGAATCACGAATCAACCCTGAAAACCCTTAAAATGGGCTTAAA
ATTGCCAATGTGGGGGGGGGACTCCCTTTTTTTTTTCTTCTAAAGAAAGT
TTAATATATTAATGGGCGGAGAACCGAATTTCCTGGGGTTCCTCTTCCCC
CTTATTTAAAAAAAATTTTTTCCCTCTTTCGGCTCCCTGTAGAAAAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCACTGTGTAAATGAGCCACATGTTCTGTATCCATTCTTCAG
TTGAAGGACATCTGGGCCATTTCCAGCTTCTGGCTATTACAAATAAGTTG
CTATGAACATACTGGAACATGTGCCCTTGTGGCATGGTGGGGCAACTTTT
TGGTATATGCCAGAGATGTATTTCCAGTTTTCAGAGGAACAGCTAGATTG
ATTCCCAGAGTTGTTGTACAGTTTGCAATCCCACCAGAAATTGTGGAATT
TCCCTATATTTTTTATTGCATATGCTGTCACTTGAGATTTTGTTCTTAGC
CATTCTGATTGGTGTAAAGTGGAATCTCAGGGTCATTTGGATTTGCTTTT
CCCTGATGACTAGGAACTTTGAACATTACTTGAAGAGTTTCTTGGCCTAT
CAAGATTTTTCTGTTAGGAAAGCTATGTTTAGCTCTGTACTCCATTTTAA
TTGGGTAATTTGGTATTTGTGGGGTTAACTTCTTCTTGATTGATATATAT
ATATATATGATATATATATATATATATATATTTATTTTGGNNNNTNNNNN
CNCTNTNNTTTNTTTTTTTTTTTATAAAAATTATTTTTTATTTACAAACT
TTTTTTATTAATATAAATATTTTTTCCTATTTTATAAACCTTCCCCCCTT
CCTATCTTTCTTTTCCCTCTTTCTTTCCCCTCCTTTTTCCCCTTTCTTTC
TCCCTTTCTCTTCTCCCCA

Query= MSMg01no423_g22.b1 MSMg01no423_g22.b1 CHROMAT_FILE:
MSMg01no423_g22.b1 PHD_FILE: MSMg01no423_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:07 2005
         (456 letters)



>mm_chr16_39696911_39697766
          Length = 856

 Score =  810 bits (419), Expect = 0.0
 Identities = 439/453 (96%), Gaps = 12/453 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctattcagtttccgagaaggagctttgcatagagacatacaaagaaacttcttc 63
           |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 204 ggaattctattcagtttctgagaaggagctttgcacagagacatacaaagaaacttcttc 263

                                                                       
Query: 64  taccttatgaatggatgtttactagtgtttatattttggaatgcattaaagatcgaggag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taccttatgaatggatgtttactagtgtttatattttggaatgcattaaagatcgaggag 323

                                                                       
Query: 124 agcctacatcccaaactaaacaggagcatgcatgaatgtagacatgtgtatacacacata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agcctacatcccaaactaaacaggagcatgcatgaatgtagacatgtgtatacacacata 383

                                                                       
Query: 184 ggtacacacacacaggtatacacacacacacacagatacacacacataggtatacgcaca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtacacacacacaggtatacacacacacacacagatacacacacataggtatacgcaca 443

                                                                       
Query: 244 cacacacacacacacacacacacacacacacacacacactctcacacacatacacacaag 303
           |||||||||||||||||||||||||||||||||||||||            |||||||||
Sbjct: 444 cacacacacacacacacacacacacacacacacacacac------------acacacaag 491

                                                                       
Query: 304 ggcccaaccatccatttgagttatgatactctgagcagattttaatttccttttcacaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggcccaaccatccatttgagttatgatactctgagcagattttaatttccttttcacaaa 551

                                                                       
Query: 364 atggaggctactatttcccttttagagttacaatgggcaagaggcacacatctctagctc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 atggaggctactatttcccttttagagttacaatgggcaagaggcacacatctctagctc 611

                                            
Query: 424 ccgaagtgcctcactcaaattccttttacaaat 456
           |||||||||||||||||||||||||||||||||
Sbjct: 612 ccgaagtgcctcactcaaattccttttacaaat 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 98
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)