BAC Information

Click to search

BAC

Clone NameMSMg01-427L05
Chromosome16 (Build37)
Map Location 66,297,701 - 66,297,854
singlet/doubletsinglet
Overlap genenone
Upstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
Downstream geneCadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-427L05.T7 (MSMg01no427_l05.b1)MSMg01-427L05.TJ (MSMg01no427_l05.g1)
ACCAG520837AG520838
length677774
length of high quality
(start - end)
---154 (80 - 233)
definitionCHROMAT_FILE: MSMg01no427_l05.b1 PHD_FILE: MSMg01no427_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:38 2005CHROMAT_FILE: MSMg01no427_l05.g1 PHD_FILE: MSMg01no427_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:49:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTAATCTTGGTTTGACTTTTGATATCATATCTTTCATATCACCCGT
CTTTNTTTTTTTCATTTCTTTTTCGCCTAATCTCTTGTTTTCTACAATCC
TTCGCCCCATGTTCACTTATAATATGCCGCCCTTCCCCCTAAAAAAAATA
AAAAAAAATTTTTTTTGGGGGCCCCGGGGGTGGGGAACACCCCCGCGGGG
CCCCCCTTTTTTNAAAAAAATATTTAAACCCCGGGGGTTAAAAAAACCCT
TTTTCCCCCAAACCCCCCTTAAAAAAATTTAAAATTTTTTTTCTCCCCCC
CCAAGAAAAGAGAAAATTCCCCCGGCCGGGGAAAATTTCCCCCTATAGGT
TTTTAAAAGATCTCCTTCCGCGGGGAAAAAAAAACCCCCCCCCCCCCCCC
CCAAAAATTTTTTTTTTTTTTTTTTTTTTTTTTAATAAAAAAAAAAAAAA
AAAAAATACACCTTTCGGGGTCGCTGGGCGGGCGGTCTTGGGGNTCTGTG
TTACGGCATGGTCGCGATGCGCATCGTCCCTTTTCGCTGCCCCTATCAGC
TATCCTTATGGCCCAACTATTTTTCTCAGCGTTTTCTTTTTTTTTACCAC
CCTACACCCCCTATCCCCCCTTTCGTTTCCCCCCCTTTTTTTTCCCCCTT
CCCCACCCTCCCACCATTATCCCCATC
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAACTTGTTGCCAATGGAA
GCAGCTTTCTTTGGCAACAACAGCTAACAAGGATCCAAAGAGTTGAGGTA
CTAAGCTTTATCTGTAAGGAAACATTTTCATTTGGGTTAGATGCTCAGTT
TTTCAAAAATTGTGTTTGGAATGTGCACATGAANAGAATTGGCTGATCAG
TGGNATATTCCCCCACTTTTGGGGAAAGTAACAAGGGGAAAAATGGGAAN
GGGCCCTTTAAAGTTTTTTTAACCTTAAACCGGGTTGGTGTAATTAAAAC
ACCCCTAATTTTTTCCCCCCCCCCCGGGGGTTTTTTTTTAAAAAAAAAAC
CCCAAGAGGGGGGGCCCCCCCCCCCACGTTTTTTGGGGGGGGGAAAAAAT
AAATATTTGGGGCCCCCGCGGAGAAAAAAGAGNCTACAAAAAGGTGGGGG
GGGGGCGGGGGGAAAACACCTCCCTGGTGGGTGTTTTCTGCGGGGGGAAA
CACCCCCGGCGTTTTTAAAATAAAATTTTGNCGCTTGCACGTGGCGTGTT
GTCTGTTCTGGCGTTTTTTTCTTCCCTNCTCATCTTCTAACCTTCCCANG
TGGTAGACTCGTCCCTCCCTCCTTTTCTTCCTTCGTGGTTGGCGCGTGTT
GGAGAGAATTGCACCCTATTCCTCTATACNTTTCTTTTTCTNTTATCTAA
NTATATAAAATCTGATGGTGAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no427_l05.g1 MSMg01no427_l05.g1 CHROMAT_FILE:
MSMg01no427_l05.g1 PHD_FILE: MSMg01no427_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:38 2005
         (154 letters)



>mm_chr16_66297501_66298054
          Length = 554

 Score =  275 bits (142), Expect = 1e-78
 Identities = 151/154 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaacttgttgccaatggaagcagctttctttggcaacaacagctaacaaggatccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaacttgttgccaatggaagcagctttctttggcaacaacagctaacaaggatccaaa 260

                                                                       
Query: 61  gagttgaggtactaagctttatctgtaaggaaacattttcatttgggttagatgctcagt 120
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gagttgaggtactgagctttatctgtaaggaaacattttcatttgggttagatgatcagt 320

                                             
Query: 121 ttttcaaaaattgtgtttggaatgtgcacatgaa 154
           |||||||||||||||||||||||||||| |||||
Sbjct: 321 ttttcaaaaattgtgtttggaatgtgcatatgaa 354


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 554
Length adjustment: 8
Effective length of query: 146
Effective length of database: 546
Effective search space:    79716
Effective search space used:    79716
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)