BAC Information

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BAC

Clone NameMSMg01-428G16
Chromosome16 (Build37)
Map Location 35,670,935 - 35,793,864
singlet/doubletdoublet
Overlap geneDirc2, Hspbap1
Upstream geneRopn1, Ccdc14, Mylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663
Downstream geneParp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428G16.T7 (MSMg01no428_g16.b1)MSMg01-428G16.TJ (MSMg01no428_g16.g1)
ACCAG521387AG521388
length769749
length of high quality
(start - end)
240 (78 - 317)243 (77 - 319)
definitionCHROMAT_FILE: MSMg01no428_g16.b1 PHD_FILE: MSMg01no428_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:35 2005CHROMAT_FILE: MSMg01no428_g16.g1 PHD_FILE: MSMg01no428_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,670,935 - 35,671,174)(35,793,623 - 35,793,864)
sequence
TTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAGGAGCCGC
GGAATTCATTTTGTGTCAAATTAATTTAAAAATAATGTCAGTTTTTCTAC
TGCAATACTCCATGAGCAGAAAAAAATTACTAACATGTATAATATTTGTG
ACTAAATCACCTTTGATCCAGATGAAGGGATACGCAGAGAAATGAGGAAG
AGGAAATAGCGTTGCACAGTGTAATGGTACTCAGAGAATATGAGGCTTTA
GGGCTTTGGTCCACCTCAGTTGGTACAGCGCTTACCCAGCATGCACTTAG
CCCTGAGGTCAAGCCCCATTATTGATTAATCCTGGATGTGATGGTGCAAG
TCTGTCATCCCAGTACTCAGGAGGCAGGATCAGAACTTCAAGGTCATCTT
CGACTACACAGCAAGGTTAAGGCCAGCCTGGGCTACATGAGACTCTGCAA
TTTTCAGTACTGTTTTGAAAGACAGCAGTACGTGATGATGCAGATGTGGG
GTGACCACTGGTTTCATCTTTTCTCCCTATTTCCTTCATCCTTTGATTTT
TTCCCCCCCTTTTTTTCATATTGTATGCCCTGTTTTCTTTCAAATATCCC
CCCCTACACAACTCTTGTTTATTTTTCCATTTCAACCCCTCTTTCGCCCT
CTCCCCCCCTTTTTTTTTTCTTATCTTCGATCCACTAAAACACGCTTCTC
GAAATTTCCTCCCCTCTTCTTCATTTCCCCGTCTCCACTATCTCCCTTTT
TTTTATACTTCCCCCTCCA
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGAGATCCTCTGCCTCATGCCA
GAAGGGTTTCTTTAAAGTGAGCACTCTGTATAACTATAAAAACCTTTTAG
ATGAATAAAATTCAAAGATACTGAGGAAGGAAGAGTAACAGACGAGCAGA
GTAGACGAGTGGTTGCCAGAAGCTGGGGTGAGTAGGCAGGATGGACCGAC
TGGGAAAGAATAGTTGTGGGAATTATGTTACAGTTAGATAGGAGATGGTC
TGGTGTCCTAACACACAATTTATTTACAATGTAACCACGTATTTCAAAAG
AAATATTTTGATACTTTAATTACAAAGAAATGGTCAATATTCTGATTGAT
ATGTAATATATACATATTCAGAAATATCATATGCTACAAAAATATATATA
ACATATCAGCATGTCTGTAATCCCTGTGGAGGCTGAGGCAGGAGGATTAC
CTCCAATTTAAGGCAAGCTTGGGAGAGCTATACAGTGGTGCAGTGAGCTA
TAGAGTGAGACACCATAATGGGAGGCAAACAACAACAGCAGCAACAAAAA
CCATAGCAACAGCAACAATACTGCAGCAGCAGCAGCAATAACAGCAACAA
TAGCCCTAAGCTCACAGGAAGTGAGTAACTGGGCTGTCTGAGCTATAGTT
TCTCACACTCCAATGTGTATCAGTGCTTAGATGGTGCTTTCAATATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_g16.b1 MSMg01no428_g16.b1 CHROMAT_FILE:
MSMg01no428_g16.b1 PHD_FILE: MSMg01no428_g16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:35 2005
         (240 letters)



>mm_chr16_35670735_35671374
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaataatgtcagtttttctactgcaatactccatgagcagaaaaaaattactaacatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaataatgtcagtttttctactgcaatactccatgagcagaaaaaaattactaacatg 260

                                                                       
Query: 61  tataatatttgtgactaaatcacctttgatccagatgaagggatacgcagagaaatgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataatatttgtgactaaatcacctttgatccagatgaagggatacgcagagaaatgagg 320

                                                                       
Query: 121 aagaggaaatagcgttgcacagtgtaatggtactcagagaatatgaggctttagggcttt 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 aagaggaaatagcgttgcacagtgtaatggtactcagagaatgtgaggctttagggcttt 380

                                                                       
Query: 181 ggtccacctcagttggtacagcgcttacccagcatgcacttagccctgaggtcaagcccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtccacctcagttggtacagcgcttacccagcatgcacttagccctgaggtcaagcccc 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no428_g16.g1 MSMg01no428_g16.g1 CHROMAT_FILE:
MSMg01no428_g16.g1 PHD_FILE: MSMg01no428_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:35 2005
         (243 letters)



>mm_chr16_35793544_35794186
          Length = 643

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagagatcctctgcctcatgccagaagggtttctttaaagtgagcactctgtataacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagagatcctctgcctcatgccagaagggtttctttaaagtgagcactctgtataacta 262

                                                                       
Query: 61  taaaaaccttttagatgaataaaattcaaagatactgaggaaggaagagtaacagacgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaaaaccttttagatgaataaaattcaaagatactgaggaaggaagagtaacagacgag 202

                                                                       
Query: 121 cagagtagacgagtggttgccagaagctggggtgagtaggcaggatggaccgactgggaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cagagtagacgagtggttgccagaagctggggtgagtaggcaggatggactgactgggaa 142

                                                                       
Query: 181 agaatagttgtgggaattatgttacagttagataggagatggtctggtgtcctaacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 agaatagttgtgggaattatgttacagttagataggagatggtctggtgtcctaacacac 82

             
Query: 241 aa 242
           ||
Sbjct: 81  aa 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)