BAC Information

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BAC

Clone NameMSMg01-428M15
Chromosome16 (Build37)
Map Location 14,463,232 - 14,463,457
singlet/doubletsinglet
Overlap geneAbcc1
Upstream geneParn, LOC100043196, 3110001I22Rik, Pla2g10, A930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik
Downstream geneGm1758, Snai2, Efcab1, LOC100042737, LOC665653, LOC385748, LOC100042743, LOC547302, EG632352
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428M15.T7 (MSMg01no428_m15.b1)MSMg01-428M15.TJ (MSMg01no428_m15.g1)
ACCAG521672AG521673
length754785
length of high quality
(start - end)
463 (71 - 533)242 (76 - 317)
definitionCHROMAT_FILE: MSMg01no428_m15.b1 PHD_FILE: MSMg01no428_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:04 2005CHROMAT_FILE: MSMg01no428_m15.g1 PHD_FILE: MSMg01no428_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTAAATTTCCATCTGTGATTATTAAGTCTTTAAAATGGGACTG
CTATTAGGTCCTTTTCTGATAGTCAAAACTGCACTGACAACTCTCCCAGG
TGTCAGCATATAATTGCTCTTAGATAGTAATCAGACTTTCTCCTACTCAG
AGCACATTCCAAGAGGTTGTAAAACAATTATTCAAAGGTCATAAAAAGAG
AACTAACAATTTATTATAGGTGATAGGACAGAAGATAAAATATCGACTGG
GTTTATCTATATGAAACTTCTTTAATAAATTAGTTATGGTTTTAAACCTT
CAGTGAACCTGTGGAGCTAAGACAGGTGATGAATGTTTAGCCAGATAACT
ACTCCTGATGGATATACATGTAACATGGATAGTCACTGTTGTAAACTTCT
ATTTCAATTTATGATTTGATTTTGTTGTGTGAGCTTATAATGAACTTTGT
AACATTTGATCATGTATTCTGAAAGATGTATAAGCACTGAAGACAAAAGA
AGAGTACAACTTTTTTCCTTTTCTCCTCCTGGAAGAATCTTTTCCCTTAC
TAGAAATTTTGCCCCCTTCCCCACTTAAAAGAATTTTTTGTCCTTCCCCA
CTTAGGAACTTTCTGGCCCTCCCCCTTACTAGTTTTCTTAACAAAATTTT
TACTCACTTAATAATACACCGTCCTAACTTTTTTTCTTACCGCCTTTTTT
TTCN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTCTTTCCATCTTGGGATGTGATT
TAAGAATAAGGTTTATGTAGCAAGAGCTGAGCAGTCCCTACTTGCTGAGC
AATCTCAGCCCTGTTTTTACAGTTACCAAAAAACAAACAAACAAACAAAC
AAACAAACAAACAAACAAACAAAAAACCCAAAAACCAAATGTATACTGAC
TGGCAGTTTGAATGAGATTGAGCCCCATTGGCTCAAATGTTTGCACACTT
GGCTCCCAGTTGGTAGCTTTTTGTGGTTAGGGTTAGGAGGTATGGCCTTG
CTGGAATATTGACCACACTTGAGGCCTTAAAAGTTACATGTGCCATTCCC
AGTTTGTTCTCACCCTTCATGCTTAGGCTTCAAGAATTGAGTTCTCACCT
GTCCTTGCCGACAAGGTATAACGACTGTCCTTACTTTCTTATGTGAAGAT
GCCCAAGGACCTACCCCCCCCCCCTCCCCCCTATTTGTTCTACGCCCAAT
TATTTACTTATCTAGCTTCTCCCTTTCCTATTCTCTATTTTATTCCCACC
ACTCTTATCTTTCACTTTCCCCTCCCTTTAATTTTTCTCCCCATCCTACC
TTCTCTTTTTTTTTCCTCTCTCCTTTTCTTCCAATATATTATCTTTAGTA
CCATATCCTCCCCTCTTCCCCCCTCTTTCCTTCTTTATTTCCTTCCCCTC
CCCCTTTTCACACCCTCTTCTTTTTTTCCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_m15.g1 MSMg01no428_m15.g1 CHROMAT_FILE:
MSMg01no428_m15.g1 PHD_FILE: MSMg01no428_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:04 2005
         (242 letters)



>mm_chr16_14463032_14463673
          Length = 642

 Score =  402 bits (208), Expect = e-117
 Identities = 226/242 (93%), Gaps = 16/242 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctttccatcttgggatgtgatttaagaataaggtttatgtagcaagagctgagcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctttccatcttgggatgtgatttaagaataaggtttatgtagcaagagctgagcagt 260

                                                                       
Query: 61  ccctacttgctgagcaatctcagccctgtttttacagttaccaaaaaacaaacaaacaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctacttgctgagcaatctcagccctgtttttacagttaccaaaaaacaaacaaacaaa 320

                                                                       
Query: 121 caaacaaacaaacaaacaaacaaacaaaaaacccaaaaaccaaatgtatactgactggca 180
           ||||||||||||                ||||||||||||||||||||||||||||||||
Sbjct: 321 caaacaaacaaa----------------aaacccaaaaaccaaatgtatactgactggca 364

                                                                       
Query: 181 gtttgaatgagattgagccccattggctcaaatgtttgcacacttggctcccagttggta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gtttgaatgagattgagccccattggctcaaatgtttgcacacttggctcccagttggta 424

             
Query: 241 gc 242
           ||
Sbjct: 425 gc 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)