BAC Information

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BAC

Clone NameMSMg01-432I06
Chromosome16 (Build37)
Map Location 39,756,266 - 39,756,708
singlet/doubletsinglet
Overlap genenone
Upstream geneB4galt4, Upk1b, 4930435E12Rik, Igsf11
Downstream geneLOC667400
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432I06.T7 (MSMg01no432_i06.b1)MSMg01-432I06.TJ (MSMg01no432_i06.g1)
ACCAG524516AG524517
length817818
length of high quality
(start - end)
450 (43 - 492)287 (68 - 354)
definitionCHROMAT_FILE: MSMg01no432_i06.b1 PHD_FILE: MSMg01no432_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:16 2005CHROMAT_FILE: MSMg01no432_i06.g1 PHD_FILE: MSMg01no432_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:56:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGCATCCGCGGAA
TTCAGAGGATTATCCGCTTCTACTTAAAAATAAATACTATAGAATAATAA
AAGATGGCAAAAACTTACCTACTGTGAAATGAAGAAATGTGTTCCAAGTA
ATTCATGAATGTAAGAGCAATAAAAATAGAAAATACAGAAACTTTGAAAT
AAAACAAAATTCATACCATCGAGTAGCTTTAAACTATCTAAAAAAAGTTA
CTCTAGATAGATGTATAAATAAATATCATGAAATATCTGTCATATCCACT
TGGTAGATAAGTTACAGCATTGAAAGAACTCTTACAAGTGGGCAGCATCT
TTACAAAAAAAATGGATAAAATATTCAAACAAGAAAACTATAAAAGGGGA
AAAGTCAAGTAGCCAGAGACATATATCAAAGTAATGGCTTGGGGAGATGG
CTCAGAGGCTAAAAGCACTGACTGCTCTTTTAGAGGACCTAGATTCAATT
CTCAAAACCCATATGGTAGTTCACTACCCATTTTTAACTCTAGTTTCTGT
GGATCCCATGCTTTGTTTTGCCCTATATGGCTATTGGGTCATGGTTCTTC
ATGTTTAACTTTTCCTTGTTGTTTTATCACTCTTTCTCTATTCTCTATAG
TCCTATTATCTCGTATCCATCCCCTTTTTCTCTTTTCCTTCGTCATGTTT
TTTCCCCTTTTTCCCTTGCTTTATTTCTTTTCTACTTTTTGTATTCCCTT
TTCCTTATTCTTCTTCATACTCCTTGTATAATCTTCTTTCTCGCCCTGTC
TTATCTATACTGTCTTT
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTCAGGCAACCTTTGGACTGAGCACAGGGTCC
CCAATGGAGGAACTAGAGAAAAGATGCAAGGAACTGAAAGGGTTTGTAGC
CCCATAGGATGAACAATATGAACCAACTAGTACTCCCAGAGCTCCCAGGG
ACTAAACCACCAACCAAAGAGTACACATGGAGGGACCTATGGCTCCAGCT
GCTTATGTAGCACAATGACAAGGTGAGCAGAAGGGAAGATGTTTGAATAT
TTCTGAGAAGGGAAATTAAAATAGATAATGATGAAAGATAAGGATGGAAG
GAGGCATTTTTCGTTTCGCTCGGCCTTTTGTCTTCGTGGTCTCTGTGGTG
TTTGTATGTTTGCCCTCCCGTTTCGCTTCTTATTACCATTCTCTGTCTTT
TTCGCCTTATTCCGCTTCTTCTTTTTTCTTGCTGCTGCTGTTGTTGTGCC
GTCGGTCCGCTCTTTTTGGGGGTGTTGTTCTTTGTCCTCGTCCCTTTTTG
GTCTTTTCGTTTTTCTTTTTGACTTCTTGTCATTCTTGTTTTCTTATTCG
TGTTCGTCCTCTTCTTCCATCACCTTTTTTTTTTTCCTGTTCGCCCCCAA
CTCTCTTTCTTATGTTTTTTTTCATCCCTTGCCTTATTACTTTCGCCCAT
TTTTTAACCAAGATCTTGTCTTTGTGCGACCCTTCCTTTTTCCTCTGCTC
GTGTTTGCGCTGTCTGGCTTGTCGTCACCTTGGCCGCTTTTCGTTTTGCT
CTTCCGTGGTTTTCGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_i06.b1 MSMg01no432_i06.b1 CHROMAT_FILE:
MSMg01no432_i06.b1 PHD_FILE: MSMg01no432_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:56:16 2005
         (450 letters)



>mm_chr16_39756061_39756908
          Length = 848

 Score =  814 bits (421), Expect = 0.0
 Identities = 439/447 (98%), Gaps = 6/447 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcagaggattatcc--gcttctacttaaaaataaatactatagaataataaaagat 63
           |||||||||||||||     ||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcagaggatta---aagcttctacttaaaaataaatactatagaataataaaagat 262

                                                                       
Query: 64  ggcaaaaacttacctactgtgaaatgaagaaatgtgttccaagtaattcatgaatgtaag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 263 ggcaaaaacttacctactgtgaaatgaagaaatgtgttccaagtaattcatgaatgtgag 322

                                                                       
Query: 124 agcaataaaaatagaaaatacagaaactttgaaataaaacaaaattcataccatcgagta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agcaataaaaatagaaaatacagaaactttgaaataaaacaaaattcataccatcgagta 382

                                                                       
Query: 184 gctttaaactatctaaaaaaagttactctagatagatgtataaataaatatcatgaaata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gctttaaactatctaaaaaaagttactctagatagatgtataaataaatatcatgaaata 442

                                                                       
Query: 244 tctgtcatatccacttggtagataagttacagcattgaaagaactcttacaagtgggcag 303
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tccgtcatatccacttggtagataagttacagcattgaaagaactcttacaagtgggcag 502

                                                                       
Query: 304 catctttacaaaaaaaatggataaaatattcaaacaagaaaactataaaaggggaaaagt 363
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 catctttacaaaaaaa-tggataaaatattcaaacaagaaaactataaaaggggaaaagt 561

                                                                       
Query: 364 caagtagccagagacatatatcaaagtaatggcttggggagatggctcagaggctaaaag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caagtagccagagacatatatcaaagtaatggcttggggagatggctcagaggctaaaag 621

                                      
Query: 424 cactgactgctcttttagaggacctag 450
           |||||||||||||||||||||||||||
Sbjct: 622 cactgactgctcttttagaggacctag 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 848
Length adjustment: 10
Effective length of query: 440
Effective length of database: 838
Effective search space:   368720
Effective search space used:   368720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)