BAC Information

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BAC

Clone NameMSMg01-433C16
Chromosome16 (Build37)
Map Location 4,516,067 - 4,516,304
singlet/doubletsinglet
Overlap geneSrl
Upstream geneLOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332, Adcy9, EG620313
Downstream geneTcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433C16.T7 (MSMg01no433_c16.b1)MSMg01-433C16.TJ (MSMg01no433_c16.g1)
ACCAG525012AG525013
length856789
length of high quality
(start - end)
64 (73 - 136)238 (67 - 304)
definitionCHROMAT_FILE: MSMg01no433_c16.b1 PHD_FILE: MSMg01no433_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:10 2005CHROMAT_FILE: MSMg01no433_c16.g1 PHD_FILE: MSMg01no433_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACXXXXXXXXXXXXXXXXXXXXXXXXXATAGTTCGNGACCCCGCGGAAT
TCTCTCTCTGTAGCAACACTGGTCTCAAACTCAGAGATCCATCTGCCTTT
GCCTCCCAAATGCTGGTATCCCTTATTATTGTTGTTGTTGTGTTGCCTCC
CCCCCCCCCCTTCTCTTTTTTTTCCCCCTTCCACCCCCCCACTCTTCCCC
CCCCCCCTCAACACATCACCAAATCATTACCCCCACCCCCTCTTCCCCCC
CCCCCCCATTTTTTTTTTTCCCCCATCCTCCCCCCCCCCCCTCTTATTCC
CCCCCCCTCTCACCCCCCCCCCCTACCACCCCACTTTCCAATCCCTTTCC
CCNCCCCGACCCCCCCCCCCTCCCCCCCTACCCCTTCTCCTCCCCCCCCC
CCCCTACGCCCCCCCCCCTCTCATTCCTCCCCCCCTTCTTTTTCCCCCCC
CCCCCCCCCCTCTCTTCCCATTTTTTAAATTATCCCCCCCCCCCCACCTC
CATTTATCTTCCCCCCCCCCCCCCCCCTTCTTTTTCTCCCTCCCCCCCTT
ATTTCCCCCCCCCCCATCTCCCCCTTTTCTCCTTTCCTACTTACTCCCTC
ACACTCCTCCCCCCCCAACCCTCCTTTCCCCCCTTCCCCCCCCCATCTTT
TTCCTCCCACCCCCTTTCTTCTTTACCCCCTTCCCCTCCTCACATCCCCC
TCTTTTTTCTCTTTCCCCCCCCTTACCTTTACCCTTGTCCCCCCCATTCC
TTTCCCCCCCCCCTCTTTTCCCCTTCCCCTCCATATCCCTCTCCCCCCCC
TCCACTTCCCCTCCCCCCCCATCCCCCACCCTTTTACCTCTCCCTCCTCT
TTCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGGGACTACCTGTTGCCTGTGTATTGTAATTAAG
GAGTTCCACAGGCCTTGCTCACCAAAGCAATAGGAAATTCTGCCTTAGAG
ATGCATTTCTCCAGGTAAAAATGACAGTTCAAGCTATTGAGTCCTGGTCT
TCCATTAACATGAGTATAGCTTTTCCATGGTAGGTAGTAGAAATGAAGAA
CAGACACAGTGCTGGTAGGGAGATGGAGAAGTAGGTCAAAAAAGAATTAC
ATGGGCTGGATTTTATTTCTCAGCGGGCAAGAGCACTTACTGCTACTCCT
GAGGTTCTGAGTTCAACTCCCAGCAATCACATGGTGTTTCTCCACTATTT
GTAATGAACTCCGACGTCCTCTTCTGGTGTGCCTAATAATCGTTGACTGC
TGCACTCCATTTTACATAACCTTAATCTACCGTACAGATCTTACCCCTAT
CTACATTTCCCCCCCCTTTCTTCTCCTCGCATTCCCCTTTTCCCTTCTAC
TTCTGTTCCTTTCCCCCCTCTTACCTCTCTTTCCCTTTCCCTTTCCCTCT
TTCTCCCTCTTTCTCCCTCTTCCTTCCCTTTCTTTCTCTTTCCTTTTCCT
TTTTCCTTTCTTTATTTTTTTCCCCCTCCTCCCTTCCCTTCCCATTTCCC
TCCCCCCTATTTCCCTTTCCCTTTTCCCTTCCGTTCCCCCTCTTTCCCTA
TCCTTTCGCATATCCCCTTTTTCCCTTTTCTCTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_c16.g1 MSMg01no433_c16.g1 CHROMAT_FILE:
MSMg01no433_c16.g1 PHD_FILE: MSMg01no433_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:11 2005
         (238 letters)



>mm_chr16_4515867_4516504
          Length = 638

 Score =  437 bits (226), Expect = e-127
 Identities = 235/238 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggactacctgttgcctgtgtattgtaattaaggagttccacaggccttgctcaccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggactacctgttgcctgtgtattgtaattaaggagttccacaggccttgctcaccaaa 260

                                                                       
Query: 61  gcaataggaaattctgccttagagatgcatttctccaggtaaaaatgacagttcaagcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaataggaaattctgccttagagatgcatttctccaggtaaaaatgacagttcaagcta 320

                                                                       
Query: 121 ttgagtcctggtcttccattaacatgagtatagcttttccatggtaggtagtagaaatga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ttgagtcctggtcttccattaacatgagtatagcttttccatggtaggtagtggaaatga 380

                                                                     
Query: 181 agaacagacacagtgctggtagggagatggagaagtaggtcaaaaaagaattacatgg 238
           |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 agaacacacacagtgctggtagggagatggagaagtaagtcaaaaaagaattacatgg 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)