Query= MSMg01no433_n12.b1 MSMg01no433_n12.b1 CHROMAT_FILE:
MSMg01no433_n12.b1 PHD_FILE: MSMg01no433_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:03 2005
(240 letters)
>mm_chr16_62320463_62321102
Length = 640
Score = 406 bits (210), Expect = e-118
Identities = 231/238 (97%)
Strand = Plus / Minus
Query: 1 atacacaaagaacatccaacatgagcaaagtatggactgagagtctgcattaagcctaac 60
|||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||
Sbjct: 438 atacacaaagaacatccagcatgagcaaagtatggactgagagtttgtattaagcctaac 379
Query: 61 cgagactgcctggtgagaaatacttctcacagagcagcctttaatgcattttcatggata 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 378 agagactgcctggtgagaaatacttctcagagagcagcctttaatgcattttcatggaga 319
Query: 121 ttttatatttttagttgcgagcctagccttcaatagctgagctatctctccagcccatac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttttatatttttagttgcgagcctagccttcaatagctgagctatctctccagcccatac 259
Query: 181 acagagcttgtaaaggcaaagaacacaaaaaaactacatcttggttgttgttggaggg 238
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 258 acagagcttgtaaaggcaaagaacacagaaaaactacatcttggttgttgttggaggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no433_n12.g1 MSMg01no433_n12.g1 CHROMAT_FILE:
MSMg01no433_n12.g1 PHD_FILE: MSMg01no433_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:03 2005
(459 letters)
>mm_chr16_62191955_62192817
Length = 863
Score = 789 bits (408), Expect = 0.0
Identities = 447/462 (96%), Gaps = 6/462 (1%)
Strand = Plus / Plus
Query: 3 gtgccttatttaaagtgtcagaaatctttgggacttggtgaagggctcgtcaccatccta 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gtgccttatttaaagtgtcagaaatctttgggacttggtgaagggctcgtcaccatccta 262
Query: 63 caaaatatgaaatatgatcattaaatgttacctacacttgcttcagaagactttcaacac 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 caaaatatgaaatatgatcattaaatgttacctacacttgcttcagaagactttcaacac 322
Query: 123 acgtcttctaaagtaaatagaattcagtctatagatactcttgccaaaaatttctaatac 182
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acgtcttctaaagcaaatagaattcagtctatagatactcttgccaaaaatttctaatac 382
Query: 183 tatctgggcttatttcttggctatagtgaagatactgt-gt----gtatttcatagctca 237
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 383 tatctgggcttatttcttggctatagtgaagatactgtcgtaactgtatttcatagctca 442
Query: 238 gcataacccaataccactgcaataatccacaccatcaactgcaaacaccttttaagatct 297
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcaaaacccaataccactgcaataatccacaccatcaactgcaaacaccttttaagatct 502
Query: 298 agaaaaaacataaacttttacaatctagattaccaatacaatcatatatgcttctgattt 357
||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 503 agaaaaaacataagcttttacaatctagattaccaatacaatcacatatgctactgattt 562
Query: 358 cagagatggaaaactaacacagatacaatgtttataaactttaaccacaaaacatttacc 417
|||||||||||| |||||||||||| ||||||||| ||||||||||||||||| |||||
Sbjct: 563 cagagatggaaa-ctaacacagatatgatgtttatacactttaaccacaaaacacttacc 621
Query: 418 aagtgacttctaatgtctcttaagaaattcagtgatatgtaa 459
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aagtgacttctaatgtctcttaagaaattcagtgatatgtaa 663
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 863
Length adjustment: 10
Effective length of query: 449
Effective length of database: 853
Effective search space: 382997
Effective search space used: 382997
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
